Variant report

Variant	rs11934332
Chromosome Location	chr4:85686879-85686880
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11930713	1.00[AMR][1000 genomes]
rs11939300	0.87[ASW][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947168	1.00[AMR][1000 genomes]
rs11947757	1.00[YRI][hapmap]
rs17009245	1.00[YRI][hapmap]
rs1838038	0.85[YRI][hapmap]
rs3747681	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
2	chr4:85636400-85701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:85657000-85704200	Weak transcription	Psoas Muscle	Psoas
4	chr4:85664000-85703400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:85664000-85703600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:85664200-85703600	Weak transcription	Right Ventricle	heart
7	chr4:85668600-85703800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:85669600-85703600	Weak transcription	Aorta	Aorta
9	chr4:85670600-85700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:85672200-85702400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:85672400-85700600	Weak transcription	Spleen	Spleen
12	chr4:85672400-85707000	Weak transcription	Colonic Mucosa	Colon
13	chr4:85672800-85700600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:85672800-85703600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:85672800-85703600	Weak transcription	Esophagus	oesophagus
16	chr4:85672800-85703600	Weak transcription	NHLF	lung
17	chr4:85673000-85695600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:85673000-85700600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:85673200-85689600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr4:85673200-85692400	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:85673200-85703600	Weak transcription	HepG2	liver
22	chr4:85673600-85700800	Weak transcription	Lung	lung
23	chr4:85673800-85700600	Weak transcription	Pancreas	Pancrea
24	chr4:85674600-85702200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr4:85675000-85695400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:85675000-85700600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:85675200-85702800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:85675200-85703600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:85675400-85692200	Weak transcription	Ovary	ovary
30	chr4:85675600-85703600	Weak transcription	Fetal Brain Male	brain
31	chr4:85675800-85700400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr4:85676200-85700800	Weak transcription	HMEC	breast
33	chr4:85676400-85692200	Weak transcription	Brain Germinal Matrix	brain
34	chr4:85676400-85695600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:85676400-85698200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:85676600-85688800	Weak transcription	Fetal Intestine Large	intestine
37	chr4:85676600-85689000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr4:85676600-85689000	Weak transcription	Fetal Lung	lung
39	chr4:85676600-85689000	Weak transcription	Left Ventricle	heart
40	chr4:85676600-85691400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:85676600-85692200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr4:85676600-85694600	Weak transcription	NHDF-Ad	bronchial
43	chr4:85676600-85695200	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:85676600-85695200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr4:85676600-85700600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:85676800-85691600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr4:85677200-85707200	Weak transcription	NHEK	skin
48	chr4:85678400-85689000	Weak transcription	Fetal Stomach	stomach
49	chr4:85678400-85689400	Weak transcription	Fetal Brain Female	brain
50	chr4:85678400-85691400	Weak transcription	Muscle Satellite Cultured Cells	--

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