Variant report

Variant	rs11937088
Chromosome Location	chr4:87811567-87811568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87799265..87800918-chr4:87810195..87812041,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11938345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012122	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823793	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7687489	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87801600-87811800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:87803200-87811800	Weak transcription	NHEK	skin
3	chr4:87804200-87812600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:87806800-87811800	Weak transcription	Fetal Lung	lung
5	chr4:87806800-87812000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:87806800-87812600	Weak transcription	Adipose Nuclei	Adipose
7	chr4:87806800-87813000	Weak transcription	Left Ventricle	heart
8	chr4:87807200-87812800	Weak transcription	Brain Anterior Caudate	brain
9	chr4:87808200-87811800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:87808200-87811800	Weak transcription	Pancreas	Pancrea
11	chr4:87808200-87812000	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:87808200-87812200	Weak transcription	Fetal Intestine Large	intestine
13	chr4:87808200-87812600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:87808600-87812200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:87809200-87811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:87809200-87812000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:87809200-87812000	Weak transcription	Placenta	Placenta
18	chr4:87809400-87811800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:87810400-87812000	Weak transcription	Esophagus	oesophagus
20	chr4:87810800-87812000	Weak transcription	HUVEC	blood vessel
21	chr4:87811000-87811800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:87811400-87811800	Enhancers	HMEC	breast

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