Variant report

Variant	rs11937770
Chromosome Location	chr4:88344063-88344064
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88310667..88314164-chr4:88342247..88345345,4	K562	blood:
2	chr4:88309813..88313902-chr4:88342245..88346379,5	K562	blood:

Variant related genes	Relation type
ENSG00000198189	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11932891	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11932933	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11935226	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11936273	0.84[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11940597	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11945232	0.86[YRI][hapmap]
rs56189054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56253808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58555412	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60350615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60465726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60622737	1.00[AFR][1000 genomes]
rs6825532	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6826257	0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6833270	0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6833835	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6838776	0.84[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6839314	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877349	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88342400-88344800	Active TSS	Brain Anterior Caudate	brain
2	chr4:88342400-88345400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:88342400-88345400	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr4:88342600-88345000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr4:88342600-88345400	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr4:88342600-88345400	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr4:88342600-88346000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr4:88342800-88344800	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr4:88342800-88344800	Active TSS	Brain Hippocampus Middle	brain
10	chr4:88342800-88345000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:88342800-88345000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:88342800-88345000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:88342800-88345000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:88343000-88344400	Active TSS	Esophagus	oesophagus
15	chr4:88343000-88344600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:88343000-88344600	Active TSS	Osteobl	bone
17	chr4:88343000-88344800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:88343000-88344800	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr4:88343000-88344800	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr4:88343000-88344800	Active TSS	Rectal Smooth Muscle	rectum
21	chr4:88343000-88344800	Active TSS	A549	lung
22	chr4:88343000-88344800	Active TSS	HMEC	breast
23	chr4:88343000-88344800	Active TSS	NHEK	skin
24	chr4:88343000-88345000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:88343000-88345000	Active TSS	Colonic Mucosa	Colon
26	chr4:88343000-88345000	Active TSS	HSMMtube	muscle
27	chr4:88343000-88345000	Active TSS	NHDF-Ad	bronchial
28	chr4:88343000-88345200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:88343000-88345200	Active TSS	NHLF	lung
30	chr4:88343000-88345400	Active TSS	H9 Cell Line	embryonic stem cell
31	chr4:88343000-88345400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:88343000-88345400	Active TSS	Ovary	ovary
33	chr4:88343000-88345800	Active TSS	HSMM	muscle
34	chr4:88343200-88344200	Active TSS	Primary T cells from cord blood	blood
35	chr4:88343200-88344400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:88343200-88344400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr4:88343200-88344400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr4:88343200-88344400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:88343200-88344400	Active TSS	Gastric	stomach
40	chr4:88343200-88344400	Active TSS	Lung	lung
41	chr4:88343200-88344600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:88343200-88344600	Active TSS	Placenta Amnion	Placenta Amnion
43	chr4:88343200-88344600	Active TSS	Dnd41	blood
44	chr4:88343200-88344800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr4:88343200-88344800	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr4:88343200-88344800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr4:88343200-88344800	Active TSS	Brain Angular Gyrus	brain
48	chr4:88343200-88344800	Active TSS	Fetal Heart	heart
49	chr4:88343200-88344800	Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr4:88343200-88345000	Active TSS	Left Ventricle	heart

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