Variant report

Variant	rs72877357
Chromosome Location	chr4:88340151-88340152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11932891	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11932933	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11935226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11936273	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11937770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11940597	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56189054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56253808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58555412	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60350615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60465726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60622737	1.00[AFR][1000 genomes]
rs6825532	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6826257	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6833270	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6833835	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6838776	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6839314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877349	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88329600-88342600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:88331800-88340400	Weak transcription	Stomach Mucosa	stomach
3	chr4:88334600-88342800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:88336400-88340600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr4:88337200-88340600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:88337400-88340600	Enhancers	Liver	Liver
7	chr4:88337800-88340400	Enhancers	HepG2	liver
8	chr4:88338200-88340400	Weak transcription	A549	lung
9	chr4:88338400-88340600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:88338600-88340400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:88339400-88343000	Enhancers	Fetal Intestine Large	intestine
12	chr4:88339800-88340600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:88340000-88340200	Enhancers	Colonic Mucosa	Colon
14	chr4:88340000-88343000	Enhancers	Fetal Intestine Small	intestine
15	chr4:88340000-88343000	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links