Variant report

Variant	rs11937852
Chromosome Location	chr4:91203145-91203146
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:91047990..91050021-chr4:91202743..91205801,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184305	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10026112	1.00[MEX][hapmap]
rs11931220	0.83[AMR][1000 genomes]
rs11933080	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs11935964	1.00[AMR][1000 genomes]
rs11936096	0.83[AMR][1000 genomes]
rs11936121	0.83[AMR][1000 genomes]
rs11937018	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11938553	0.83[AMR][1000 genomes]
rs11938585	0.83[AMR][1000 genomes]
rs11938724	0.83[AMR][1000 genomes]
rs11940793	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11941084	1.00[MEX][hapmap]
rs11943332	0.83[AMR][1000 genomes]
rs11944606	0.83[AMR][1000 genomes]
rs11944958	1.00[AMR][1000 genomes]
rs11945084	1.00[MEX][hapmap]
rs11946053	1.00[MEX][hapmap]
rs11946195	0.83[AMR][1000 genomes]
rs11947451	1.00[MEX][hapmap]
rs11947703	1.00[MEX][hapmap]
rs28612327	0.83[AMR][1000 genomes]
rs28632139	0.83[AMR][1000 genomes]
rs6813228	1.00[MEX][hapmap]
rs6828199	1.00[MEX][hapmap]
rs6831098	1.00[MEX][hapmap]
rs6832140	1.00[MEX][hapmap]
rs6848616	1.00[MEX][hapmap]
rs72877792	1.00[AMR][1000 genomes]
rs72877796	0.83[AMR][1000 genomes]
rs72877797	0.83[AMR][1000 genomes]
rs72877798	0.83[AMR][1000 genomes]
rs72877799	0.83[AMR][1000 genomes]
rs72879723	0.83[AMR][1000 genomes]
rs72879731	0.83[AMR][1000 genomes]
rs72879733	0.83[AMR][1000 genomes]
rs72879736	0.83[AMR][1000 genomes]
rs72879737	0.83[AMR][1000 genomes]
rs72879745	0.83[AMR][1000 genomes]
rs72879747	0.83[AMR][1000 genomes]
rs7356145	1.00[MEX][hapmap]
rs7356351	0.83[AMR][1000 genomes]
rs7675868	0.83[AMR][1000 genomes]
rs7676068	0.83[AMR][1000 genomes]
rs7676938	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1007804	chr4:91122398-91217331	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879540	chr4:91156104-91212092	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879541	chr4:91156104-91253355	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879542	chr4:91185206-91287204	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv818250	chr4:91195869-91212092	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv524051	chr4:91195869-91227681	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91200800-91203200	Enhancers	Fetal Intestine Large	intestine
2	chr4:91201400-91203200	Enhancers	Fetal Intestine Small	intestine
3	chr4:91201800-91204000	Enhancers	Fetal Brain Female	brain
4	chr4:91202200-91203400	Enhancers	Brain Germinal Matrix	brain
5	chr4:91202200-91204000	Enhancers	Fetal Brain Male	brain
6	chr4:91202400-91203200	Enhancers	Duodenum Mucosa	Duodenum

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