Variant report

Variant	rs28632139
Chromosome Location	chr4:91202662-91202663
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10015971	1.00[ASN][1000 genomes]
rs10016078	1.00[ASN][1000 genomes]
rs10022446	1.00[ASN][1000 genomes]
rs11931183	1.00[ASN][1000 genomes]
rs11931220	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11932221	1.00[ASN][1000 genomes]
rs11933080	1.00[ASN][1000 genomes]
rs11935964	0.83[AMR][1000 genomes]
rs11936096	1.00[ASN][1000 genomes]
rs11936121	1.00[ASN][1000 genomes]
rs11937018	0.83[AMR][1000 genomes]
rs11937852	0.83[AMR][1000 genomes]
rs11938553	1.00[ASN][1000 genomes]
rs11938585	1.00[ASN][1000 genomes]
rs11938724	1.00[ASN][1000 genomes]
rs11940424	1.00[ASN][1000 genomes]
rs11940793	0.83[AMR][1000 genomes]
rs11941322	1.00[ASN][1000 genomes]
rs11943050	1.00[ASN][1000 genomes]
rs11943059	1.00[ASN][1000 genomes]
rs11943332	1.00[ASN][1000 genomes]
rs11944606	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11944958	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11945084	1.00[ASN][1000 genomes]
rs11945094	1.00[ASN][1000 genomes]
rs11945262	1.00[ASN][1000 genomes]
rs11946053	1.00[ASN][1000 genomes]
rs11946195	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1431023	1.00[ASN][1000 genomes]
rs28612327	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28870519	1.00[ASN][1000 genomes]
rs56719283	1.00[ASN][1000 genomes]
rs57759641	1.00[ASN][1000 genomes]
rs57853206	1.00[ASN][1000 genomes]
rs60438266	1.00[ASN][1000 genomes]
rs60654585	1.00[ASN][1000 genomes]
rs60666775	1.00[ASN][1000 genomes]
rs61529592	1.00[ASN][1000 genomes]
rs6821342	1.00[ASN][1000 genomes]
rs6821731	1.00[ASN][1000 genomes]
rs6822231	1.00[ASN][1000 genomes]
rs6828014	1.00[ASN][1000 genomes]
rs6828199	1.00[ASN][1000 genomes]
rs6832140	1.00[ASN][1000 genomes]
rs6848616	1.00[ASN][1000 genomes]
rs6853618	1.00[ASN][1000 genomes]
rs72877722	1.00[ASN][1000 genomes]
rs72877723	1.00[ASN][1000 genomes]
rs72877725	1.00[ASN][1000 genomes]
rs72877727	1.00[ASN][1000 genomes]
rs72877729	1.00[ASN][1000 genomes]
rs72877730	1.00[ASN][1000 genomes]
rs72877732	1.00[ASN][1000 genomes]
rs72877735	1.00[ASN][1000 genomes]
rs72877737	1.00[ASN][1000 genomes]
rs72877738	1.00[ASN][1000 genomes]
rs72877741	1.00[ASN][1000 genomes]
rs72877744	1.00[ASN][1000 genomes]
rs72877745	1.00[ASN][1000 genomes]
rs72877746	1.00[ASN][1000 genomes]
rs72877747	1.00[ASN][1000 genomes]
rs72877748	1.00[ASN][1000 genomes]
rs72877751	1.00[ASN][1000 genomes]
rs72877752	1.00[ASN][1000 genomes]
rs72877754	1.00[ASN][1000 genomes]
rs72877758	0.83[ASN][1000 genomes]
rs72877779	1.00[ASN][1000 genomes]
rs72877781	1.00[ASN][1000 genomes]
rs72877783	1.00[ASN][1000 genomes]
rs72877785	1.00[ASN][1000 genomes]
rs72877787	1.00[ASN][1000 genomes]
rs72877789	1.00[ASN][1000 genomes]
rs72877790	1.00[ASN][1000 genomes]
rs72877791	1.00[ASN][1000 genomes]
rs72877792	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72877796	0.83[ASN][1000 genomes]
rs72877797	1.00[ASN][1000 genomes]
rs72877798	1.00[ASN][1000 genomes]
rs72877799	1.00[ASN][1000 genomes]
rs72879723	1.00[ASN][1000 genomes]
rs72879731	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72879733	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72879736	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72879737	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72879745	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72879747	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7356351	1.00[ASN][1000 genomes]
rs7663400	1.00[ASN][1000 genomes]
rs7675868	1.00[ASN][1000 genomes]
rs7676068	0.91[ASN][1000 genomes]
rs7688487	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1007804	chr4:91122398-91217331	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879540	chr4:91156104-91212092	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879541	chr4:91156104-91253355	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879542	chr4:91185206-91287204	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv818250	chr4:91195869-91212092	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv524051	chr4:91195869-91227681	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91200800-91203200	Enhancers	Fetal Intestine Large	intestine
2	chr4:91201400-91203200	Enhancers	Fetal Intestine Small	intestine
3	chr4:91201600-91202800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:91201800-91204000	Enhancers	Fetal Brain Female	brain
5	chr4:91202200-91203400	Enhancers	Brain Germinal Matrix	brain
6	chr4:91202200-91204000	Enhancers	Fetal Brain Male	brain
7	chr4:91202400-91203200	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links