Variant report

Variant	rs11938177
Chromosome Location	chr4:62309781-62309782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10001827	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10009335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10032317	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11131327	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11946022	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13117013	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1456874	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1494923	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2168584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2606711	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2643036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs335349	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9995985	1.00[CEU][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879076	chr4:62251077-62354791	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2753138	chr4:62271444-62442507	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62294000-62328000	Weak transcription	Fetal Stomach	stomach
2	chr4:62308200-62312000	Enhancers	Fetal Intestine Small	intestine
3	chr4:62308800-62310200	Enhancers	Brain Substantia Nigra	brain
4	chr4:62308800-62310200	Enhancers	HSMM	muscle
5	chr4:62308800-62310400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:62309200-62310000	Enhancers	HUVEC	blood vessel
7	chr4:62309200-62310200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:62309200-62311600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:62309400-62309800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:62309400-62309800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:62309400-62309800	Active TSS	HMEC	breast
12	chr4:62309400-62309800	Active TSS	NH-A	brain
13	chr4:62309400-62309800	Flanking Active TSS	NHEK	skin
14	chr4:62309400-62310200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr4:62309400-62310400	Enhancers	Fetal Heart	heart
16	chr4:62309400-62310600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:62309400-62310600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:62309400-62310600	Enhancers	Hela-S3	cervix
19	chr4:62309600-62310000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:62309600-62310000	Enhancers	Brain Hippocampus Middle	brain
21	chr4:62309600-62310200	Active TSS	Brain Anterior Caudate	brain
22	chr4:62309600-62310200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr4:62309600-62311000	Enhancers	Stomach Mucosa	stomach
24	chr4:62309600-62314200	Enhancers	Fetal Intestine Large	intestine

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