Variant report

Variant	rs11938833
Chromosome Location	chr4:54652502-54652503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11929959	1.00[AMR][1000 genomes]
rs57977861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157385	1.00[AMR][1000 genomes]
rs73159214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73159241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54644800-54652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:54648400-54652800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:54648600-54655600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:54649600-54652800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:54650600-54654600	Enhancers	NHDF-Ad	bronchial
6	chr4:54651000-54653600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:54651000-54654200	Enhancers	Fetal Stomach	stomach
8	chr4:54651400-54653600	Enhancers	Ovary	ovary
9	chr4:54651400-54654400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:54651400-54654600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:54651800-54653800	Enhancers	NHLF	lung
12	chr4:54651800-54654200	Enhancers	Placenta	Placenta
13	chr4:54652000-54652600	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:54652000-54653600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:54652200-54653400	Enhancers	Fetal Muscle Leg	muscle
16	chr4:54652200-54653600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr4:54652400-54653400	Enhancers	Fetal Kidney	kidney
18	chr4:54652400-54653600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:54652400-54653600	Enhancers	Fetal Lung	lung
20	chr4:54652400-54653600	Enhancers	Osteobl	bone
21	chr4:54652400-54653800	Enhancers	HSMMtube	muscle
22	chr4:54652400-54654400	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links