Variant report

Variant	rs73159214
Chromosome Location	chr4:54645772-54645773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11929959	1.00[AMR][1000 genomes]
rs11938833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57977861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157385	1.00[AMR][1000 genomes]
rs73159241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54643800-54647400	Weak transcription	Liver	Liver
2	chr4:54644000-54648000	Weak transcription	NH-A	brain
3	chr4:54644200-54647000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:54644200-54648000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:54644600-54646200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:54644600-54646800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:54644600-54647400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:54644800-54647000	Weak transcription	NHLF	lung
9	chr4:54644800-54652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:54645200-54646600	Weak transcription	Osteobl	bone
11	chr4:54645200-54647000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:54645200-54648000	Weak transcription	Fetal Stomach	stomach
13	chr4:54645400-54646400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:54645400-54646400	Weak transcription	A549	lung
15	chr4:54645400-54646600	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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