Variant report

Variant	rs11939455
Chromosome Location	chr4:31046095-31046096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11729276	0.85[AFR][1000 genomes]
rs11930980	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941871	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4533721	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60468790	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448741	0.86[AFR][1000 genomes]
rs6821602	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73216797	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73218811	0.86[AFR][1000 genomes]
rs73218813	0.86[AFR][1000 genomes]
rs7661111	0.84[AFR][1000 genomes]
rs7662263	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31043200-31050600	Weak transcription	Psoas Muscle	Psoas
2	chr4:31043800-31050000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:31043800-31052800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:31044000-31046400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:31044400-31046200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:31044400-31047200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:31045800-31046400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:31045800-31046800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:31045800-31046800	Weak transcription	Stomach Mucosa	stomach
10	chr4:31045800-31047400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:31046000-31046400	Weak transcription	Fetal Heart	heart
12	chr4:31046000-31047000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:31046000-31047000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:31046000-31047000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:31046000-31047000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:31046000-31047800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:31046000-31049800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:31046000-31052800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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