Variant report

Variant	rs73216797
Chromosome Location	chr4:31042413-31042414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11930980	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939455	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941871	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4533721	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60468790	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821602	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73218803	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7662263	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31034200-31043000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:31036800-31042600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:31041200-31043200	Weak transcription	Aorta	Aorta
4	chr4:31042000-31045400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:31042200-31044000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:31042200-31044000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:31042400-31042600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:31042400-31043400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:31042400-31043800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:31042400-31044000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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