Variant report

Variant	rs11939739
Chromosome Location	chr4:96125665-96125666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96124156..96126262-chr4:96134196..96136311,2	K562	blood:
2	chr4:96086744..96087935-chr4:96125403..96126613,4	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10009874	1.00[AMR][1000 genomes]
rs11943923	1.00[AMR][1000 genomes]
rs7676559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96098000-96127000	Weak transcription	Right Atrium	heart
2	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
3	chr4:96110600-96133800	Weak transcription	Gastric	stomach
4	chr4:96110600-96134000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:96112600-96127200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:96115400-96134000	Weak transcription	Aorta	Aorta
7	chr4:96115800-96132800	Weak transcription	Right Ventricle	heart
8	chr4:96118800-96126000	Strong transcription	Fetal Lung	lung
9	chr4:96119600-96128200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:96122600-96127600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:96123000-96131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:96124200-96131000	Weak transcription	Lung	lung
13	chr4:96124200-96133800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:96124200-96135400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:96124200-96135400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:96124400-96132000	Weak transcription	Osteobl	bone
17	chr4:96124800-96126600	Enhancers	Brain Angular Gyrus	brain
18	chr4:96125000-96126400	Enhancers	Brain Anterior Caudate	brain
19	chr4:96125000-96126400	Enhancers	Brain Cingulate Gyrus	brain
20	chr4:96125000-96126400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr4:96125000-96133800	Weak transcription	Fetal Stomach	stomach
22	chr4:96125400-96126000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:96125400-96126000	Enhancers	Brain Germinal Matrix	brain
24	chr4:96125400-96126200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr4:96125400-96126400	Enhancers	Brain Substantia Nigra	brain
26	chr4:96125400-96126600	Genic enhancers	Brain Hippocampus Middle	brain
27	chr4:96125600-96125800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:96125600-96125800	Genic enhancers	Ovary	ovary
29	chr4:96125600-96126000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr4:96125600-96126000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:96125600-96126000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:96125600-96126000	Enhancers	HSMMtube	muscle
33	chr4:96125600-96126400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:96125600-96126400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:96125600-96131000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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