Variant report

Variant	rs11943923
Chromosome Location	chr4:96123622-96123623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10009874	1.00[AMR][1000 genomes]
rs10011534	1.00[AMR][1000 genomes]
rs11939739	1.00[AMR][1000 genomes]
rs7676559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96098000-96127000	Weak transcription	Right Atrium	heart
2	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
3	chr4:96110600-96133800	Weak transcription	Gastric	stomach
4	chr4:96110600-96134000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:96112600-96125600	Weak transcription	Ovary	ovary
6	chr4:96112600-96127200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:96112800-96125400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:96115400-96134000	Weak transcription	Aorta	Aorta
9	chr4:96115800-96132800	Weak transcription	Right Ventricle	heart
10	chr4:96116800-96124800	Weak transcription	Brain Angular Gyrus	brain
11	chr4:96118600-96125000	Strong transcription	Fetal Stomach	stomach
12	chr4:96118800-96126000	Strong transcription	Fetal Lung	lung
13	chr4:96119600-96128200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:96121400-96124000	Strong transcription	Brain Cingulate Gyrus	brain
15	chr4:96122000-96124200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:96122400-96125600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:96122600-96127600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:96122800-96124200	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr4:96123000-96124200	Strong transcription	Brain Anterior Caudate	brain
20	chr4:96123000-96125200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:96123000-96125600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:96123000-96131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:96123200-96123800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:96123200-96124200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:96123200-96124200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:96123200-96124400	Enhancers	Brain Germinal Matrix	brain
27	chr4:96123400-96124200	Strong transcription	Brain Hippocampus Middle	brain
28	chr4:96123600-96124200	Strong transcription	Brain Substantia Nigra	brain
29	chr4:96123600-96124400	Strong transcription	Osteobl	bone

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