Variant report

Variant	rs11939959
Chromosome Location	chr4:48124021-48124022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48123791..48126043-chr4:48128232..48130518,2	MCF-7	breast:
2	chr4:48123606..48125834-chr4:48126808..48128865,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11941225	0.83[AFR][1000 genomes]
rs4695313	1.00[AMR][1000 genomes]
rs4695314	1.00[AMR][1000 genomes]
rs56672591	1.00[AMR][1000 genomes]
rs58776528	1.00[AMR][1000 genomes]
rs73145971	1.00[AMR][1000 genomes]
rs73147911	1.00[AMR][1000 genomes]
rs73814679	1.00[AMR][1000 genomes]
rs73814681	1.00[AMR][1000 genomes]
rs73814692	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48106000-48129400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:48118400-48129600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr4:48118600-48128200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:48118800-48127400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:48118800-48128800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:48118800-48129000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:48120600-48126200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:48121600-48124600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr4:48121600-48129400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr4:48121800-48128800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:48122000-48124200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:48122600-48129400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr4:48122800-48124200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr4:48122800-48124800	Enhancers	Primary T cells from cord blood	blood
15	chr4:48122800-48125600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr4:48122800-48129400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr4:48123000-48124200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:48123000-48137600	Weak transcription	Gastric	stomach
19	chr4:48123400-48125400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr4:48124000-48124400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:48124000-48124400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr4:48124000-48124400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:48124000-48124800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:48124000-48127200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr4:48124000-48129600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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