Variant report

Variant	rs11940924
Chromosome Location	chr4:175547126-175547127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11930831	1.00[ASN][1000 genomes]
rs11934522	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11937740	1.00[ASN][1000 genomes]
rs11939060	1.00[ASN][1000 genomes]
rs11940363	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943254	1.00[ASN][1000 genomes]
rs2612674	1.00[ASN][1000 genomes]
rs3101259	1.00[ASN][1000 genomes]
rs72996748	0.84[AFR][1000 genomes]
rs7686945	0.89[AFR][1000 genomes]
rs7699832	1.00[ASN][1000 genomes]
rs9992442	1.00[EUR][1000 genomes]
rs9999342	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880679	chr4:175502088-175552622	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv880497	chr4:175513812-175556222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175540200-175547200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:175540200-175548400	Weak transcription	Stomach Mucosa	stomach
3	chr4:175545200-175550200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:175547000-175547800	Enhancers	Fetal Intestine Large	intestine
5	chr4:175547000-175548200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr4:175547000-175548600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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