Variant report

Variant	rs11942234
Chromosome Location	chr4:148398071-148398072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10305845	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10305848	1.00[AMR][1000 genomes]
rs10305851	1.00[AMR][1000 genomes]
rs10305853	1.00[AMR][1000 genomes]
rs10305859	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10305869	1.00[AMR][1000 genomes]
rs10305880	1.00[AMR][1000 genomes]
rs10305885	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10305889	0.82[YRI][hapmap]
rs10305908	1.00[YRI][hapmap]
rs11930745	1.00[AMR][1000 genomes]
rs11930820	1.00[AMR][1000 genomes]
rs11933442	1.00[AMR][1000 genomes]
rs11937200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11941665	1.00[AMR][1000 genomes]
rs11942203	1.00[AMR][1000 genomes]
rs11942855	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944922	1.00[AMR][1000 genomes]
rs11946826	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947440	1.00[AMR][1000 genomes]
rs1400555	1.00[AMR][1000 genomes]
rs17023371	1.00[AMR][1000 genomes]
rs17023373	1.00[AMR][1000 genomes]
rs56787274	1.00[AMR][1000 genomes]
rs57268018	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57342589	1.00[AMR][1000 genomes]
rs57772875	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58576007	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58791171	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58824158	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59458570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60433830	1.00[AMR][1000 genomes]
rs6818686	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6825558	1.00[AMR][1000 genomes]
rs72953564	1.00[AMR][1000 genomes]
rs72953576	1.00[AMR][1000 genomes]
rs72953582	1.00[AMR][1000 genomes]
rs72953588	1.00[AMR][1000 genomes]
rs72953589	1.00[AMR][1000 genomes]
rs72955634	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72955654	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72955655	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72955684	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72955687	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959547	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959554	1.00[AMR][1000 genomes]
rs72959560	1.00[AMR][1000 genomes]
rs72959562	1.00[AMR][1000 genomes]
rs72959579	1.00[AMR][1000 genomes]
rs72959582	1.00[AMR][1000 genomes]
rs72961617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961622	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7660300	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684691	1.00[AMR][1000 genomes]
rs7684717	1.00[AMR][1000 genomes]
rs7684882	1.00[AMR][1000 genomes]
rs7685896	1.00[AMR][1000 genomes]
rs7685925	1.00[AMR][1000 genomes]
rs7686338	1.00[AMR][1000 genomes]
rs7686739	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148383400-148401000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:148397400-148401600	Weak transcription	Aorta	Aorta

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