Variant report

Variant	rs72953588
Chromosome Location	chr4:148351097-148351098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10305845	1.00[AMR][1000 genomes]
rs10305848	1.00[AMR][1000 genomes]
rs10305851	1.00[AMR][1000 genomes]
rs10305853	1.00[AMR][1000 genomes]
rs10305859	1.00[AMR][1000 genomes]
rs10305869	1.00[AMR][1000 genomes]
rs10305880	1.00[AMR][1000 genomes]
rs10305885	1.00[AMR][1000 genomes]
rs11930745	1.00[AMR][1000 genomes]
rs11930820	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11933442	1.00[AMR][1000 genomes]
rs11937200	1.00[AMR][1000 genomes]
rs11941665	1.00[AMR][1000 genomes]
rs11942203	1.00[AMR][1000 genomes]
rs11942234	1.00[AMR][1000 genomes]
rs11942855	1.00[AMR][1000 genomes]
rs11944922	1.00[AMR][1000 genomes]
rs11946826	1.00[AMR][1000 genomes]
rs11947440	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1400555	1.00[AMR][1000 genomes]
rs17023371	1.00[AMR][1000 genomes]
rs17023373	1.00[AMR][1000 genomes]
rs56787274	1.00[AMR][1000 genomes]
rs57268018	1.00[AMR][1000 genomes]
rs57342589	1.00[AMR][1000 genomes]
rs57772875	1.00[AMR][1000 genomes]
rs58576007	1.00[AMR][1000 genomes]
rs58791171	1.00[AMR][1000 genomes]
rs58824158	1.00[AMR][1000 genomes]
rs59458570	1.00[AMR][1000 genomes]
rs60433830	1.00[AMR][1000 genomes]
rs6818686	1.00[AMR][1000 genomes]
rs6825558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953564	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953576	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72955634	1.00[AMR][1000 genomes]
rs72955654	1.00[AMR][1000 genomes]
rs72955655	1.00[AMR][1000 genomes]
rs72955684	1.00[AMR][1000 genomes]
rs72955687	1.00[AMR][1000 genomes]
rs72959547	1.00[AMR][1000 genomes]
rs72959554	1.00[AMR][1000 genomes]
rs72959560	1.00[AMR][1000 genomes]
rs72959562	1.00[AMR][1000 genomes]
rs72959579	1.00[AMR][1000 genomes]
rs72959582	1.00[AMR][1000 genomes]
rs72961617	1.00[AMR][1000 genomes]
rs72961622	1.00[AMR][1000 genomes]
rs7660300	1.00[AMR][1000 genomes]
rs7684691	1.00[AMR][1000 genomes]
rs7684717	1.00[AMR][1000 genomes]
rs7684882	1.00[AMR][1000 genomes]
rs7685896	1.00[AMR][1000 genomes]
rs7685925	1.00[AMR][1000 genomes]
rs7686338	1.00[AMR][1000 genomes]
rs7686739	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv966327	chr4:148346351-148351227	Enhancers Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148350600-148354400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:148351000-148351600	Enhancers	Ovary	ovary

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