Variant report

Variant	rs11942384
Chromosome Location	chr4:21515082-21515083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21513582..21515656-chr4:21764630..21766290,2	MCF-7	breast:
2	chr4:21510988..21512730-chr4:21514428..21516962,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10000010	0.82[MEX][hapmap]
rs10805227	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10938841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10938842	0.94[AFR][1000 genomes]
rs11726770	0.94[AFR][1000 genomes]
rs11735155	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs11937275	0.90[AFR][1000 genomes]
rs11944745	0.85[ASW][hapmap]
rs11946264	0.92[ASW][hapmap];0.94[LWK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs12642679	0.82[AFR][1000 genomes]
rs12643105	0.89[YRI][hapmap]
rs13134068	0.82[EUR][1000 genomes]
rs13145740	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1460478	0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs1503995	0.88[CEU][hapmap]
rs16871329	0.89[YRI][hapmap]
rs1870626	0.85[CHB][hapmap]
rs1976300	0.91[CEU][hapmap]
rs2279672	0.93[AFR][1000 genomes]
rs2279673	0.92[ASW][hapmap];0.97[LWK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs2279674	0.84[CHB][hapmap]
rs2279675	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs41385945	0.92[ASW][hapmap];0.88[LWK][hapmap];0.96[YRI][hapmap]
rs67726727	0.93[AFR][1000 genomes]
rs6810518	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6833065	0.85[CHB][hapmap]
rs6845922	0.99[ASN][1000 genomes]
rs7669729	0.88[CEU][hapmap]
rs7676653	0.88[CEU][hapmap]
rs7685162	0.93[AFR][1000 genomes]
rs7685957	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv878750	chr4:21492445-21520250	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21514200-21515800	Enhancers	Fetal Heart	heart
2	chr4:21514600-21516800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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