Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1013226	0.84[CEU][hapmap]
rs1013568	0.86[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs10805225	1.00[JPT][hapmap]
rs10805227	0.91[CEU][hapmap]
rs10938841	0.88[CEU][hapmap]
rs11942384	0.91[CEU][hapmap]
rs12640010	0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1565947	0.88[CEU][hapmap]
rs17466482	0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs1824470	0.99[ASN][1000 genomes]
rs1841371	0.86[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs1841372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1976299	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993683	0.89[JPT][hapmap]
rs2322965	0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs2322966	0.90[ASN][1000 genomes]
rs4552441	0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs6827581	0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs6842233	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs6847007	0.89[ASN][1000 genomes]
rs7688716	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv527163	chr4:21490361-21494981	Strong transcription Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21487600-21492600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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