Variant report

Variant	rs4552441
Chromosome Location	chr4:21489333-21489334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1013568	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10805225	0.89[JPT][hapmap]
rs12640010	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17466482	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1824470	0.91[ASN][1000 genomes]
rs1841371	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1841372	0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs1976299	0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs1976300	0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1993683	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2125965	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2322965	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2322966	1.00[ASN][1000 genomes]
rs358557	0.85[CEU][hapmap]
rs6827581	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6842233	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs6847007	1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs7688716	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21487600-21492600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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