Variant report

Variant	rs6842233
Chromosome Location	chr4:21469568-21469569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1013568	0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs10805225	0.82[JPT][hapmap]
rs12640010	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1460491	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17466482	0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1824470	0.90[ASN][1000 genomes]
rs1841371	0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs1841372	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1976299	0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs1976300	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1993683	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2322965	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2322966	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35571849	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs358569	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs358571	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs358572	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs358573	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4552441	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs6827581	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6842721	0.83[AMR][1000 genomes]
rs6847007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014062	chr4:21270358-21479027	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv593800	chr4:21456023-21471568	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	n/a
6	nsv593804	chr4:21469139-21477084	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21468800-21469800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:21468800-21470000	Enhancers	NHEK	skin
3	chr4:21468800-21470200	Enhancers	HMEC	breast
4	chr4:21469200-21470000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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