Variant report

Variant	rs11943162
Chromosome Location	chr4:99520895-99520896
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10033777	0.82[AFR][1000 genomes]
rs1358548	0.80[AMR][1000 genomes]
rs1893714	0.93[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4699353	0.92[CEU][hapmap];0.90[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6844261	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99508800-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:99509600-99522200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:99511200-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:99519400-99522600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:99519800-99522600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:99520200-99521200	ZNF genes & repeats	NH-A	brain
7	chr4:99520400-99522000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr4:99520600-99521000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr4:99520600-99521000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
10	chr4:99520600-99521400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:99520600-99521800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:99520600-99522000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr4:99520800-99521000	ZNF genes & repeats	HSMM	muscle
14	chr4:99520800-99522000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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