Variant report

Variant	rs10033777
Chromosome Location	chr4:99511718-99511719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11938326	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938479	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943162	0.82[AFR][1000 genomes]
rs17027806	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699355	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4699657	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699658	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323635	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323637	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62323638	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323639	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323640	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7670467	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670572	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950152	0.84[EUR][1000 genomes]
rs9997798	0.96[EUR][1000 genomes]
rs9997807	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99507000-99513600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:99508200-99513600	Weak transcription	NHEK	skin
3	chr4:99508600-99512000	Weak transcription	Ovary	ovary
4	chr4:99508600-99512800	Weak transcription	Fetal Heart	heart
5	chr4:99508800-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:99509400-99520600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:99509600-99520200	Weak transcription	NH-A	brain
8	chr4:99509600-99522200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:99509800-99512000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:99510400-99511800	Weak transcription	Brain Anterior Caudate	brain
11	chr4:99510400-99512000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:99510800-99513000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:99511000-99512200	Weak transcription	Fetal Brain Male	brain
14	chr4:99511000-99512200	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:99511200-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:99511600-99519800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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