Variant report

Variant	rs11938479
Chromosome Location	chr4:99511906-99511907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10026446	0.82[CEU][hapmap]
rs10033777	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938326	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528548	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17027639	1.00[JPT][hapmap]
rs17027806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699355	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4699657	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699658	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323635	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323637	0.94[ASN][1000 genomes]
rs62323638	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323639	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323640	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7670467	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670572	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950152	0.95[EUR][1000 genomes]
rs9997798	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9997807	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99507000-99513600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:99508200-99513600	Weak transcription	NHEK	skin
3	chr4:99508600-99512000	Weak transcription	Ovary	ovary
4	chr4:99508600-99512800	Weak transcription	Fetal Heart	heart
5	chr4:99508800-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:99509400-99520600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:99509600-99520200	Weak transcription	NH-A	brain
8	chr4:99509600-99522200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:99509800-99512000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:99510400-99512000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:99510800-99513000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:99511000-99512200	Weak transcription	Fetal Brain Male	brain
13	chr4:99511000-99512200	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:99511200-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:99511600-99519800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links