Variant report

Variant	rs9997798
Chromosome Location	chr4:99519841-99519842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10026446	0.82[CEU][hapmap]
rs10033777	0.96[EUR][1000 genomes]
rs11938326	0.84[EUR][1000 genomes]
rs11938479	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4699353	0.83[YRI][hapmap]
rs4699355	0.83[EUR][1000 genomes]
rs4699657	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs4699658	0.87[EUR][1000 genomes]
rs62323635	0.96[EUR][1000 genomes]
rs62323638	0.96[EUR][1000 genomes]
rs62323639	0.83[EUR][1000 genomes]
rs62323640	0.87[EUR][1000 genomes]
rs7670467	0.83[EUR][1000 genomes]
rs7670572	0.87[EUR][1000 genomes]
rs9997807	0.82[AFR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99508800-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:99509400-99520600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:99509600-99520200	Weak transcription	NH-A	brain
4	chr4:99509600-99522200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:99511200-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:99519200-99520800	Weak transcription	HSMM	muscle
7	chr4:99519400-99520400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:99519400-99522600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr4:99519800-99522600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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