Variant report

Variant	rs62323639
Chromosome Location	chr4:99521352-99521353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10033777	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938326	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938479	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528548	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17027806	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699355	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4699657	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699658	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323635	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323637	0.94[ASN][1000 genomes]
rs62323638	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62323640	0.95[EUR][1000 genomes]
rs7670467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670572	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846010	0.83[EUR][1000 genomes]
rs950152	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9997798	0.83[EUR][1000 genomes]
rs9997807	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99508800-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:99509600-99522200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:99511200-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:99519400-99522600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:99519800-99522600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:99520400-99522000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr4:99520600-99521400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:99520600-99521800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:99520600-99522000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr4:99520800-99522000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:99521000-99522600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:99521000-99524800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:99521000-99524800	Weak transcription	HSMM	muscle
14	chr4:99521200-99522600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:99521200-99522800	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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