Variant report

Variant	rs846010
Chromosome Location	chr4:99524081-99524082
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17027806	0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs4699355	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs62323639	0.83[EUR][1000 genomes]
rs7670467	0.83[EUR][1000 genomes]
rs950152	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99521000-99524800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:99521000-99524800	Weak transcription	HSMM	muscle
3	chr4:99521400-99524600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr4:99521400-99525000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:99522000-99525200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:99522200-99532200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:99522400-99526600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:99522400-99528800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr4:99522600-99524800	Enhancers	GM12878-XiMat	blood
10	chr4:99522600-99525000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:99522600-99525800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr4:99522600-99526000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr4:99522800-99524400	Enhancers	Primary T cells from cord blood	blood
14	chr4:99522800-99524600	Enhancers	NH-A	brain
15	chr4:99522800-99524800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:99523000-99524600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr4:99523000-99524600	Enhancers	NHDF-Ad	bronchial
18	chr4:99523000-99525200	Enhancers	Brain Substantia Nigra	brain
19	chr4:99523000-99527200	Enhancers	Osteobl	bone
20	chr4:99523000-99545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:99523200-99524600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr4:99523200-99524800	Enhancers	Brain Cingulate Gyrus	brain
23	chr4:99523200-99525200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr4:99523200-99526000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr4:99523400-99524200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:99523400-99524600	Enhancers	Brain Germinal Matrix	brain
27	chr4:99523400-99524800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:99523400-99528400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:99523600-99524800	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr4:99523600-99525000	Enhancers	Brain Angular Gyrus	brain
31	chr4:99523600-99525000	Enhancers	Brain Hippocampus Middle	brain
32	chr4:99523600-99525000	Enhancers	Fetal Brain Female	brain
33	chr4:99523600-99525400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:99523600-99525600	Weak transcription	NHEK	skin
35	chr4:99523600-99525800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:99523600-99532200	Weak transcription	HMEC	breast
37	chr4:99523800-99524400	Enhancers	Fetal Thymus	thymus
38	chr4:99523800-99524600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:99523800-99524800	Enhancers	Brain Anterior Caudate	brain
40	chr4:99523800-99525400	Enhancers	Primary T cells fromperipheralblood	blood
41	chr4:99523800-99525600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:99523800-99525600	Enhancers	Fetal Brain Male	brain
43	chr4:99523800-99527000	Weak transcription	Thymus	Thymus
44	chr4:99524000-99525000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:99524000-99525200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr4:99524000-99530400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:99524000-99535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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