Variant report

Variant	rs11945564
Chromosome Location	chr4:107092878-107092879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11930404	1.00[JPT][hapmap]
rs13102159	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv1799357	chr4:107058025-107099737	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1801434	chr4:107058025-107099737	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
4	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:107074200-107114400	Weak transcription	NHDF-Ad	bronchial
7	chr4:107074600-107111800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:107075800-107114000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:107075800-107118200	Weak transcription	Brain Substantia Nigra	brain
10	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
11	chr4:107076400-107114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:107078000-107107800	Weak transcription	HSMMtube	muscle
13	chr4:107078200-107116000	Weak transcription	Colonic Mucosa	Colon
14	chr4:107078800-107112200	Weak transcription	Osteobl	bone
15	chr4:107078800-107114200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:107083800-107114200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:107083800-107134000	Weak transcription	Right Ventricle	heart
19	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:107084000-107093800	Weak transcription	Fetal Brain Female	brain
21	chr4:107084000-107094000	Weak transcription	Gastric	stomach
22	chr4:107084000-107094200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:107084000-107094400	Weak transcription	Thymus	Thymus
24	chr4:107084000-107094600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:107084000-107108600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:107084000-107112200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:107084000-107116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:107084000-107129800	Weak transcription	Lung	lung
29	chr4:107084200-107093800	Weak transcription	Fetal Stomach	stomach
30	chr4:107084200-107094200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr4:107084200-107096000	Weak transcription	Fetal Muscle Leg	muscle
32	chr4:107084200-107114000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:107084200-107114000	Weak transcription	HepG2	liver
34	chr4:107084200-107114200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr4:107084200-107114200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:107084200-107129600	Weak transcription	Aorta	Aorta
37	chr4:107084400-107112200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr4:107084400-107141400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr4:107084600-107111600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:107085000-107114200	Weak transcription	Fetal Intestine Large	intestine
41	chr4:107085000-107114200	Weak transcription	Fetal Thymus	thymus
42	chr4:107085000-107117800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr4:107085000-107129600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr4:107085000-107150000	Weak transcription	Dnd41	blood
45	chr4:107085400-107098800	Weak transcription	Primary T cells from cord blood	blood
46	chr4:107085400-107169600	Weak transcription	Fetal Kidney	kidney
47	chr4:107085600-107093600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr4:107085600-107112200	Weak transcription	Primary B cells from peripheral blood	blood
49	chr4:107087000-107094200	Weak transcription	Fetal Heart	heart
50	chr4:107087000-107104400	Weak transcription	HSMM	muscle

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