Variant report

Variant	rs11930404
Chromosome Location	chr4:107028803-107028804
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11938947	1.00[YRI][hapmap]
rs11939464	0.84[AFR][1000 genomes]
rs11941861	1.00[ASW][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11944792	1.00[YRI][hapmap]
rs11945564	1.00[JPT][hapmap]
rs13102159	1.00[JPT][hapmap]
rs17036578	0.84[AFR][1000 genomes]
rs17036654	1.00[YRI][hapmap]
rs56267034	0.91[AFR][1000 genomes]
rs58780037	0.84[AFR][1000 genomes]
rs60223553	0.84[AFR][1000 genomes]
rs60532274	0.91[AFR][1000 genomes]
rs60913696	0.91[AFR][1000 genomes]
rs61461344	0.91[AFR][1000 genomes]
rs73836968	0.84[AFR][1000 genomes]
rs73836980	0.84[AFR][1000 genomes]
rs73836982	0.91[AFR][1000 genomes]
rs73836984	0.91[AFR][1000 genomes]
rs73836987	0.84[AFR][1000 genomes]
rs73836990	0.91[AFR][1000 genomes]
rs73836991	0.91[AFR][1000 genomes]
rs73836999	0.81[AFR][1000 genomes]
rs73838112	0.81[AFR][1000 genomes]
rs73838127	0.84[AFR][1000 genomes]
rs73838128	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106997200-107031000	Weak transcription	Psoas Muscle	Psoas
2	chr4:107012600-107029800	Weak transcription	Fetal Brain Male	brain
3	chr4:107012600-107029800	Weak transcription	Dnd41	blood
4	chr4:107012600-107031200	Weak transcription	Brain Angular Gyrus	brain
5	chr4:107012600-107033200	Weak transcription	Osteobl	bone
6	chr4:107012600-107033800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:107012600-107034400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
9	chr4:107012800-107030600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:107012800-107031400	Weak transcription	HSMMtube	muscle
11	chr4:107012800-107033400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:107013000-107031000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:107014000-107029800	Weak transcription	Brain Germinal Matrix	brain
14	chr4:107014000-107031000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:107014000-107031000	Weak transcription	Fetal Thymus	thymus
16	chr4:107014000-107031200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:107014000-107034600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:107014200-107029200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:107014200-107030600	Weak transcription	Right Ventricle	heart
20	chr4:107014200-107030800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr4:107014200-107031000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:107014200-107031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:107014200-107031200	Weak transcription	Colonic Mucosa	Colon
24	chr4:107014200-107031200	Weak transcription	Gastric	stomach
25	chr4:107014400-107029400	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:107014400-107031200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr4:107014600-107031200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:107014800-107031200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:107020000-107029000	Weak transcription	Fetal Lung	lung
30	chr4:107025200-107029400	Weak transcription	Fetal Heart	heart
31	chr4:107025400-107031000	Weak transcription	Lung	lung
32	chr4:107025400-107031200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr4:107025600-107031000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr4:107025600-107031000	Weak transcription	Thymus	Thymus
35	chr4:107025600-107031200	Weak transcription	Pancreas	Pancrea
36	chr4:107026200-107031000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:107026200-107031000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr4:107026200-107031200	Weak transcription	Esophagus	oesophagus
39	chr4:107026200-107033600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:107026400-107030200	Weak transcription	Aorta	Aorta
41	chr4:107026400-107030200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr4:107026400-107031200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr4:107026400-107031200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:107026600-107029400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:107026600-107031000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr4:107026800-107029000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:107026800-107031000	Weak transcription	Fetal Stomach	stomach
48	chr4:107026800-107031000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr4:107026800-107031000	Weak transcription	Spleen	Spleen
50	chr4:107026800-107035800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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