Variant report

Variant	rs73836991
Chromosome Location	chr4:107036831-107036832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11930404	0.91[AFR][1000 genomes]
rs11933357	0.86[AFR][1000 genomes]
rs11933365	0.80[AFR][1000 genomes]
rs11939464	0.93[AFR][1000 genomes]
rs11941861	0.93[AFR][1000 genomes]
rs11944792	0.86[AFR][1000 genomes]
rs17036578	0.93[AFR][1000 genomes]
rs56267034	1.00[AFR][1000 genomes]
rs56307196	0.87[AFR][1000 genomes]
rs56316903	0.87[AFR][1000 genomes]
rs58687640	0.87[AFR][1000 genomes]
rs58780037	0.93[AFR][1000 genomes]
rs60223553	0.93[AFR][1000 genomes]
rs60532274	1.00[AFR][1000 genomes]
rs60913696	1.00[AFR][1000 genomes]
rs61461344	1.00[AFR][1000 genomes]
rs73836950	0.86[AFR][1000 genomes]
rs73836968	0.93[AFR][1000 genomes]
rs73836980	0.93[AFR][1000 genomes]
rs73836982	1.00[AFR][1000 genomes]
rs73836984	1.00[AFR][1000 genomes]
rs73836987	0.93[AFR][1000 genomes]
rs73836990	1.00[AFR][1000 genomes]
rs73836999	0.90[AFR][1000 genomes]
rs73838112	0.90[AFR][1000 genomes]
rs73838127	0.93[AFR][1000 genomes]
rs73838128	0.93[AFR][1000 genomes]
rs73838156	0.80[AFR][1000 genomes]
rs73838164	0.80[AFR][1000 genomes]
rs73838167	0.80[AFR][1000 genomes]
rs73838168	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
2	chr4:107029000-107037800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:107029800-107038000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:107030800-107037800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:107031600-107052600	Weak transcription	Fetal Thymus	thymus
6	chr4:107031800-107039400	Weak transcription	Brain Angular Gyrus	brain
7	chr4:107031800-107053400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:107032000-107052200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:107032200-107038400	Weak transcription	Fetal Brain Male	brain
11	chr4:107032400-107037000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:107032600-107039600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:107033400-107039800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:107033400-107053000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:107033600-107037600	Strong transcription	Brain Hippocampus Middle	brain
16	chr4:107033600-107037800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:107033600-107038000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:107033600-107052800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:107033600-107053400	Weak transcription	Osteobl	bone
20	chr4:107033800-107037800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr4:107033800-107038200	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr4:107033800-107038400	Strong transcription	Primary T cells from cord blood	blood
23	chr4:107033800-107039000	Weak transcription	HSMMtube	muscle
24	chr4:107033800-107053400	Weak transcription	HSMM	muscle
25	chr4:107034000-107037800	Strong transcription	Adipose Nuclei	Adipose
26	chr4:107034000-107038000	Strong transcription	Stomach Smooth Muscle	stomach
27	chr4:107034000-107038400	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr4:107034200-107037400	Strong transcription	Placenta	Placenta
29	chr4:107034200-107037600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr4:107034200-107037800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr4:107034200-107038600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr4:107034200-107040200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:107034200-107053400	Weak transcription	Right Ventricle	heart
34	chr4:107034400-107037600	Strong transcription	GM12878-XiMat	blood
35	chr4:107034400-107038000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:107034600-107037000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr4:107034600-107038000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:107034800-107037200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:107034800-107037600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr4:107034800-107037600	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr4:107034800-107038000	Strong transcription	Primary B cells from cord blood	blood
42	chr4:107034800-107038000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:107034800-107038000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr4:107034800-107038400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr4:107034800-107041000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr4:107035000-107037600	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr4:107035000-107038000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:107035000-107039400	Weak transcription	Psoas Muscle	Psoas
49	chr4:107035200-107037600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:107035200-107038000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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