Variant report

Variant	rs61461344
Chromosome Location	chr4:107053855-107053856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11930404	0.91[AFR][1000 genomes]
rs11933357	0.86[AFR][1000 genomes]
rs11933365	0.80[AFR][1000 genomes]
rs11939464	0.93[AFR][1000 genomes]
rs11941861	0.93[AFR][1000 genomes]
rs11944792	0.86[AFR][1000 genomes]
rs17036578	0.93[AFR][1000 genomes]
rs56267034	1.00[AFR][1000 genomes]
rs56307196	0.87[AFR][1000 genomes]
rs56316903	0.87[AFR][1000 genomes]
rs58687640	0.87[AFR][1000 genomes]
rs58780037	0.93[AFR][1000 genomes]
rs60223553	0.93[AFR][1000 genomes]
rs60532274	1.00[AFR][1000 genomes]
rs60913696	1.00[AFR][1000 genomes]
rs73836950	0.86[AFR][1000 genomes]
rs73836968	0.93[AFR][1000 genomes]
rs73836980	0.93[AFR][1000 genomes]
rs73836982	1.00[AFR][1000 genomes]
rs73836984	1.00[AFR][1000 genomes]
rs73836987	0.93[AFR][1000 genomes]
rs73836990	1.00[AFR][1000 genomes]
rs73836991	1.00[AFR][1000 genomes]
rs73836999	0.90[AFR][1000 genomes]
rs73838112	0.90[AFR][1000 genomes]
rs73838127	0.93[AFR][1000 genomes]
rs73838128	0.93[AFR][1000 genomes]
rs73838156	0.80[AFR][1000 genomes]
rs73838164	0.80[AFR][1000 genomes]
rs73838167	0.80[AFR][1000 genomes]
rs73838168	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv4450	chr4:107037823-107082669	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv1851766	chr4:107052107-107062671	ZNF genes & repeats Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv437409	chr4:107052107-107064347	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv437410	chr4:107052107-107064347	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv437411	chr4:107052107-107074097	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:107035200-107057200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:107037600-107056200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:107037600-107060600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:107037600-107061600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:107037600-107066400	Weak transcription	Fetal Kidney	kidney
8	chr4:107037800-107077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:107038000-107055400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:107038000-107056800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:107051800-107054800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:107052600-107054000	ZNF genes & repeats	Fetal Intestine Large	intestine
14	chr4:107052600-107054000	ZNF genes & repeats	Fetal Thymus	thymus
15	chr4:107052800-107054000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr4:107052800-107054000	ZNF genes & repeats	Brain Substantia Nigra	brain
17	chr4:107052800-107054600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:107053000-107054000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
19	chr4:107053000-107054000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:107053000-107054000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:107053000-107054000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr4:107053000-107054000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:107053000-107054000	ZNF genes & repeats	Fetal Lung	lung
24	chr4:107053000-107054000	ZNF genes & repeats	Fetal Muscle Leg	muscle
25	chr4:107053000-107054000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
26	chr4:107053000-107054200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr4:107053000-107054200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
28	chr4:107053000-107054400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
29	chr4:107053000-107055200	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr4:107053200-107054000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
31	chr4:107053200-107054000	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr4:107053200-107054000	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr4:107053200-107054000	ZNF genes & repeats	Fetal Stomach	stomach
34	chr4:107053200-107054000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
35	chr4:107053200-107055200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr4:107053400-107054000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:107053400-107054000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:107053400-107054000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:107053400-107054000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
40	chr4:107053400-107054000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
41	chr4:107053400-107054000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
42	chr4:107053400-107054000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:107053400-107054000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:107053400-107054000	Strong transcription	Aorta	Aorta
45	chr4:107053400-107054000	ZNF genes & repeats	Brain Germinal Matrix	brain
46	chr4:107053400-107054000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
47	chr4:107053400-107054000	ZNF genes & repeats	Lung	lung
48	chr4:107053400-107054000	ZNF genes & repeats	Pancreas	Pancrea
49	chr4:107053400-107054000	Strong transcription	Stomach Smooth Muscle	stomach
50	chr4:107053400-107054000	ZNF genes & repeats	Dnd41	blood

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