Variant report

Variant	rs73836980
Chromosome Location	chr4:107018441-107018442
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11930404	0.84[AFR][1000 genomes]
rs11933357	0.93[AFR][1000 genomes]
rs11939464	1.00[AFR][1000 genomes]
rs11941861	1.00[AFR][1000 genomes]
rs11943335	0.84[AFR][1000 genomes]
rs11944792	0.93[AFR][1000 genomes]
rs17036578	1.00[AFR][1000 genomes]
rs56198900	0.86[AFR][1000 genomes]
rs56267034	0.93[AFR][1000 genomes]
rs58780037	1.00[AFR][1000 genomes]
rs60223553	0.86[AFR][1000 genomes]
rs60532274	0.93[AFR][1000 genomes]
rs60913696	0.93[AFR][1000 genomes]
rs61461344	0.93[AFR][1000 genomes]
rs61610478	0.86[AFR][1000 genomes]
rs73836950	0.93[AFR][1000 genomes]
rs73836968	0.86[AFR][1000 genomes]
rs73836982	0.93[AFR][1000 genomes]
rs73836984	0.93[AFR][1000 genomes]
rs73836987	1.00[AFR][1000 genomes]
rs73836990	0.93[AFR][1000 genomes]
rs73836991	0.93[AFR][1000 genomes]
rs73836999	0.96[AFR][1000 genomes]
rs73838112	0.96[AFR][1000 genomes]
rs73838127	0.86[AFR][1000 genomes]
rs73838128	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419151	chr4:106987397-107020894	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106997200-107031000	Weak transcription	Psoas Muscle	Psoas
2	chr4:107001200-107018600	Weak transcription	HUVEC	blood vessel
3	chr4:107010200-107025400	Weak transcription	Small Intestine	intestine
4	chr4:107012400-107024400	Weak transcription	Fetal Heart	heart
5	chr4:107012400-107026800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:107012600-107025000	Weak transcription	Brain Substantia Nigra	brain
7	chr4:107012600-107025200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:107012600-107026200	Weak transcription	Stomach Mucosa	stomach
9	chr4:107012600-107026600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:107012600-107026600	Weak transcription	GM12878-XiMat	blood
11	chr4:107012600-107026600	Weak transcription	HSMM	muscle
12	chr4:107012600-107026800	Weak transcription	Fetal Kidney	kidney
13	chr4:107012600-107029800	Weak transcription	Fetal Brain Male	brain
14	chr4:107012600-107029800	Weak transcription	Dnd41	blood
15	chr4:107012600-107031200	Weak transcription	Brain Angular Gyrus	brain
16	chr4:107012600-107033200	Weak transcription	Osteobl	bone
17	chr4:107012600-107033800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:107012600-107034400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
20	chr4:107012800-107019600	Weak transcription	Fetal Lung	lung
21	chr4:107012800-107022200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:107012800-107024600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr4:107012800-107024600	Weak transcription	Brain Anterior Caudate	brain
24	chr4:107012800-107024800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:107012800-107024800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:107012800-107024800	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:107012800-107024800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr4:107012800-107025400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr4:107012800-107025400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr4:107012800-107026200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr4:107012800-107030600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr4:107012800-107031400	Weak transcription	HSMMtube	muscle
33	chr4:107012800-107033400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr4:107013000-107024600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:107013000-107031000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:107014000-107024600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:107014000-107024800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr4:107014000-107029800	Weak transcription	Brain Germinal Matrix	brain
39	chr4:107014000-107031000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:107014000-107031000	Weak transcription	Fetal Thymus	thymus
41	chr4:107014000-107031200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:107014000-107034600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr4:107014200-107024800	Weak transcription	Esophagus	oesophagus
44	chr4:107014200-107024800	Weak transcription	Fetal Intestine Large	intestine
45	chr4:107014200-107024800	Weak transcription	Placenta	Placenta
46	chr4:107014200-107024800	Weak transcription	Thymus	Thymus
47	chr4:107014200-107024800	Weak transcription	Spleen	Spleen
48	chr4:107014200-107025000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr4:107014200-107025000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:107014200-107025000	Weak transcription	Aorta	Aorta

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