Variant report

Variant	rs61610478
Chromosome Location	chr4:107149646-107149647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11933365	0.86[AFR][1000 genomes]
rs11938947	0.86[AFR][1000 genomes]
rs11939464	0.86[AFR][1000 genomes]
rs11941861	0.86[AFR][1000 genomes]
rs17036578	0.86[AFR][1000 genomes]
rs56198900	1.00[AFR][1000 genomes]
rs56346493	0.82[AFR][1000 genomes]
rs58687640	0.93[AFR][1000 genomes]
rs58780037	0.86[AFR][1000 genomes]
rs73836980	0.86[AFR][1000 genomes]
rs73836987	0.86[AFR][1000 genomes]
rs73836999	0.82[AFR][1000 genomes]
rs73838112	0.82[AFR][1000 genomes]
rs73838142	0.86[AFR][1000 genomes]
rs73838156	0.86[AFR][1000 genomes]
rs73838164	0.86[AFR][1000 genomes]
rs73838167	0.86[AFR][1000 genomes]
rs73838168	0.86[AFR][1000 genomes]
rs73839460	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:107085000-107150000	Weak transcription	Dnd41	blood
6	chr4:107085400-107169600	Weak transcription	Fetal Kidney	kidney
7	chr4:107088400-107166400	Weak transcription	K562	blood
8	chr4:107105000-107169600	Weak transcription	Fetal Brain Female	brain
9	chr4:107106800-107176400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr4:107111800-107160200	Weak transcription	NHEK	skin
11	chr4:107112400-107170400	Weak transcription	Thymus	Thymus
12	chr4:107113000-107150800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:107113000-107154800	Weak transcription	Brain Angular Gyrus	brain
14	chr4:107113400-107150200	Weak transcription	Osteobl	bone
15	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:107114800-107150400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:107114800-107151000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:107114800-107154000	Weak transcription	Brain Anterior Caudate	brain
19	chr4:107114800-107154200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:107114800-107170400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:107115000-107150400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr4:107115000-107176400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:107116800-107193800	Weak transcription	Small Intestine	intestine
24	chr4:107128200-107176400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:107128400-107176400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:107130000-107181200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr4:107130200-107149800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:107130200-107150800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr4:107130200-107155400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:107130200-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:107130200-107164800	Weak transcription	Ovary	ovary
32	chr4:107130200-107176400	Weak transcription	Esophagus	oesophagus
33	chr4:107130200-107176400	Weak transcription	Fetal Stomach	stomach
34	chr4:107130200-107176400	Weak transcription	Lung	lung
35	chr4:107130200-107176600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:107130400-107149800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:107130400-107155400	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:107130400-107176400	Weak transcription	Pancreas	Pancrea
39	chr4:107130600-107176400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:107133600-107150000	Weak transcription	Fetal Lung	lung
41	chr4:107133800-107149800	Weak transcription	NHDF-Ad	bronchial
42	chr4:107134000-107151400	Weak transcription	HepG2	liver
43	chr4:107134000-107153000	Weak transcription	HUVEC	blood vessel
44	chr4:107134200-107154200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr4:107134400-107150000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:107134400-107150000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr4:107140400-107150000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr4:107140600-107154200	Weak transcription	Brain Substantia Nigra	brain
49	chr4:107141600-107149800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr4:107141600-107149800	Weak transcription	Monocytes-CD14+_RO01746	blood

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