Variant report

Variant	rs73838168
Chromosome Location	chr4:107160961-107160962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107160677..107162898-chr4:107235492..107237232,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164022	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11933365	0.87[AFR][1000 genomes]
rs11933821	0.80[AFR][1000 genomes]
rs11938947	0.86[AFR][1000 genomes]
rs11943530	0.86[AFR][1000 genomes]
rs17036654	0.93[AFR][1000 genomes]
rs56192707	0.80[AFR][1000 genomes]
rs56198900	0.86[AFR][1000 genomes]
rs56267034	0.80[AFR][1000 genomes]
rs56307196	0.80[AFR][1000 genomes]
rs56316903	0.80[AFR][1000 genomes]
rs57013982	0.93[AFR][1000 genomes]
rs58687640	0.93[AFR][1000 genomes]
rs59914606	0.83[AFR][1000 genomes]
rs60532274	0.80[AFR][1000 genomes]
rs60786555	0.80[AFR][1000 genomes]
rs60913696	0.80[AFR][1000 genomes]
rs61461344	0.80[AFR][1000 genomes]
rs61610478	0.86[AFR][1000 genomes]
rs73836982	0.80[AFR][1000 genomes]
rs73836984	0.80[AFR][1000 genomes]
rs73836990	0.80[AFR][1000 genomes]
rs73836991	0.80[AFR][1000 genomes]
rs73838156	0.87[AFR][1000 genomes]
rs73838164	1.00[AFR][1000 genomes]
rs73838167	1.00[AFR][1000 genomes]
rs73838177	0.83[AFR][1000 genomes]
rs73838180	0.93[AFR][1000 genomes]
rs73839421	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:107085400-107169600	Weak transcription	Fetal Kidney	kidney
5	chr4:107088400-107166400	Weak transcription	K562	blood
6	chr4:107105000-107169600	Weak transcription	Fetal Brain Female	brain
7	chr4:107106800-107176400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:107112400-107170400	Weak transcription	Thymus	Thymus
9	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:107114800-107170400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:107115000-107176400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:107116800-107193800	Weak transcription	Small Intestine	intestine
13	chr4:107128200-107176400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:107128400-107176400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:107130000-107181200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:107130200-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:107130200-107164800	Weak transcription	Ovary	ovary
18	chr4:107130200-107176400	Weak transcription	Esophagus	oesophagus
19	chr4:107130200-107176400	Weak transcription	Fetal Stomach	stomach
20	chr4:107130200-107176400	Weak transcription	Lung	lung
21	chr4:107130200-107176600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr4:107130400-107176400	Weak transcription	Pancreas	Pancrea
23	chr4:107130600-107176400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:107141600-107176400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:107141600-107176400	Weak transcription	Aorta	Aorta
26	chr4:107141600-107214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:107142400-107195800	Weak transcription	Psoas Muscle	Psoas
28	chr4:107144000-107176400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:107144600-107172000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr4:107144800-107170400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr4:107144800-107179600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:107145200-107170200	Weak transcription	NHLF	lung
33	chr4:107145600-107167400	Weak transcription	Brain Germinal Matrix	brain
34	chr4:107145800-107177400	Weak transcription	Colonic Mucosa	Colon
35	chr4:107146400-107176400	Weak transcription	Right Ventricle	heart
36	chr4:107147400-107164800	Weak transcription	Left Ventricle	heart
37	chr4:107148200-107179600	Weak transcription	NH-A	brain
38	chr4:107150200-107176400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:107150800-107169600	Weak transcription	HSMMtube	muscle
40	chr4:107150800-107176400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr4:107151200-107169800	Weak transcription	GM12878-XiMat	blood
42	chr4:107151400-107165200	Weak transcription	HMEC	breast
43	chr4:107151400-107169600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr4:107151600-107169800	Weak transcription	Fetal Lung	lung
45	chr4:107151600-107179200	Weak transcription	Colon Smooth Muscle	Colon
46	chr4:107151800-107166200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:107152200-107167800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:107152200-107176800	Weak transcription	Brain Hippocampus Middle	brain
49	chr4:107153200-107164800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr4:107153400-107176400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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