Variant report

Variant	rs11933365
Chromosome Location	chr4:107113366-107113367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11933821	0.87[AFR][1000 genomes]
rs17036654	0.80[AFR][1000 genomes]
rs56192707	0.87[AFR][1000 genomes]
rs56198900	0.86[AFR][1000 genomes]
rs56267034	0.80[AFR][1000 genomes]
rs56307196	0.93[AFR][1000 genomes]
rs56316903	0.93[AFR][1000 genomes]
rs56346493	0.83[AFR][1000 genomes]
rs57013982	0.80[AFR][1000 genomes]
rs58687640	0.93[AFR][1000 genomes]
rs59914606	0.90[AFR][1000 genomes]
rs60223553	0.87[AFR][1000 genomes]
rs60532274	0.80[AFR][1000 genomes]
rs60786555	0.87[AFR][1000 genomes]
rs60913696	0.80[AFR][1000 genomes]
rs61461344	0.80[AFR][1000 genomes]
rs61610478	0.86[AFR][1000 genomes]
rs73836968	0.87[AFR][1000 genomes]
rs73836982	0.80[AFR][1000 genomes]
rs73836984	0.80[AFR][1000 genomes]
rs73836990	0.80[AFR][1000 genomes]
rs73836991	0.80[AFR][1000 genomes]
rs73838127	0.87[AFR][1000 genomes]
rs73838128	0.87[AFR][1000 genomes]
rs73838142	0.86[AFR][1000 genomes]
rs73838156	1.00[AFR][1000 genomes]
rs73838164	0.87[AFR][1000 genomes]
rs73838167	0.87[AFR][1000 genomes]
rs73838168	0.87[AFR][1000 genomes]
rs73838180	0.80[AFR][1000 genomes]
rs73839421	0.80[AFR][1000 genomes]
rs73839460	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
2	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:107074200-107114400	Weak transcription	NHDF-Ad	bronchial
5	chr4:107075800-107114000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:107075800-107118200	Weak transcription	Brain Substantia Nigra	brain
7	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
8	chr4:107076400-107114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:107078200-107116000	Weak transcription	Colonic Mucosa	Colon
10	chr4:107078800-107114200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:107083800-107114200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:107083800-107134000	Weak transcription	Right Ventricle	heart
14	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:107084000-107116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:107084000-107129800	Weak transcription	Lung	lung
17	chr4:107084200-107114000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr4:107084200-107114000	Weak transcription	HepG2	liver
19	chr4:107084200-107114200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:107084200-107114200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:107084200-107129600	Weak transcription	Aorta	Aorta
22	chr4:107084400-107141400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr4:107085000-107114200	Weak transcription	Fetal Intestine Large	intestine
24	chr4:107085000-107114200	Weak transcription	Fetal Thymus	thymus
25	chr4:107085000-107117800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr4:107085000-107129600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr4:107085000-107150000	Weak transcription	Dnd41	blood
28	chr4:107085400-107169600	Weak transcription	Fetal Kidney	kidney
29	chr4:107087200-107129800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr4:107088400-107166400	Weak transcription	K562	blood
31	chr4:107088800-107116400	Weak transcription	NH-A	brain
32	chr4:107091200-107114200	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:107091200-107129200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:107091400-107114200	Weak transcription	Left Ventricle	heart
35	chr4:107091400-107114200	Weak transcription	Ovary	ovary
36	chr4:107091400-107114200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:107091400-107114400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr4:107091400-107116200	Weak transcription	Fetal Intestine Small	intestine
39	chr4:107091400-107116800	Weak transcription	Brain Germinal Matrix	brain
40	chr4:107091400-107117600	Weak transcription	Fetal Brain Male	brain
41	chr4:107091400-107129800	Weak transcription	Pancreas	Pancrea
42	chr4:107091800-107114200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr4:107092600-107114000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:107103200-107116000	Weak transcription	Psoas Muscle	Psoas
45	chr4:107103200-107119000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr4:107104200-107116800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr4:107104600-107140800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:107104800-107114600	Weak transcription	Fetal Heart	heart
49	chr4:107105000-107114000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr4:107105000-107169600	Weak transcription	Fetal Brain Female	brain

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