Variant report

Variant	rs73838177
Chromosome Location	chr4:107173417-107173418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17036654	0.83[AFR][1000 genomes]
rs57013982	0.83[AFR][1000 genomes]
rs58687640	0.83[AFR][1000 genomes]
rs73838164	0.83[AFR][1000 genomes]
rs73838167	0.83[AFR][1000 genomes]
rs73838168	0.83[AFR][1000 genomes]
rs73838180	0.83[AFR][1000 genomes]
rs73839421	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:107106800-107176400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:107115000-107176400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:107116800-107193800	Weak transcription	Small Intestine	intestine
6	chr4:107128200-107176400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:107128400-107176400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:107130000-107181200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:107130200-107176400	Weak transcription	Esophagus	oesophagus
10	chr4:107130200-107176400	Weak transcription	Fetal Stomach	stomach
11	chr4:107130200-107176400	Weak transcription	Lung	lung
12	chr4:107130200-107176600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:107130400-107176400	Weak transcription	Pancreas	Pancrea
14	chr4:107130600-107176400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:107141600-107176400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:107141600-107176400	Weak transcription	Aorta	Aorta
17	chr4:107141600-107214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:107142400-107195800	Weak transcription	Psoas Muscle	Psoas
19	chr4:107144000-107176400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:107144800-107179600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:107145800-107177400	Weak transcription	Colonic Mucosa	Colon
22	chr4:107146400-107176400	Weak transcription	Right Ventricle	heart
23	chr4:107148200-107179600	Weak transcription	NH-A	brain
24	chr4:107150200-107176400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr4:107150800-107176400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:107151600-107179200	Weak transcription	Colon Smooth Muscle	Colon
27	chr4:107152200-107176800	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:107153400-107176400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:107153800-107184200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr4:107154800-107176400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:107155200-107185400	Weak transcription	Stomach Mucosa	stomach
32	chr4:107155400-107178400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr4:107156000-107175200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:107156000-107176400	Weak transcription	Brain Anterior Caudate	brain
36	chr4:107156000-107176400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr4:107156000-107180600	Weak transcription	Brain Angular Gyrus	brain
38	chr4:107157200-107176400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:107157200-107203000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:107160800-107176400	Weak transcription	Fetal Intestine Small	intestine
41	chr4:107163000-107176400	Weak transcription	Gastric	stomach
42	chr4:107165200-107176400	Weak transcription	Spleen	Spleen
43	chr4:107166400-107185200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr4:107166800-107185400	Weak transcription	K562	blood
45	chr4:107167200-107191800	Weak transcription	HUVEC	blood vessel
46	chr4:107167400-107176400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:107167800-107177000	Strong transcription	HSMM	muscle
48	chr4:107168200-107175800	Weak transcription	Brain Germinal Matrix	brain
49	chr4:107168200-107176400	Weak transcription	Fetal Muscle Leg	muscle
50	chr4:107168600-107176400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links