Variant report

Variant	rs73836987
Chromosome Location	chr4:107034430-107034431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11930404	0.84[AFR][1000 genomes]
rs11933357	0.93[AFR][1000 genomes]
rs11939464	1.00[AFR][1000 genomes]
rs11941861	1.00[AFR][1000 genomes]
rs11943335	0.84[AFR][1000 genomes]
rs11944792	0.93[AFR][1000 genomes]
rs17036578	1.00[AFR][1000 genomes]
rs56198900	0.86[AFR][1000 genomes]
rs56267034	0.93[AFR][1000 genomes]
rs58780037	1.00[AFR][1000 genomes]
rs60223553	0.86[AFR][1000 genomes]
rs60532274	0.93[AFR][1000 genomes]
rs60913696	0.93[AFR][1000 genomes]
rs61461344	0.93[AFR][1000 genomes]
rs61610478	0.86[AFR][1000 genomes]
rs73836950	0.93[AFR][1000 genomes]
rs73836968	0.86[AFR][1000 genomes]
rs73836980	1.00[AFR][1000 genomes]
rs73836982	0.93[AFR][1000 genomes]
rs73836984	0.93[AFR][1000 genomes]
rs73836990	0.93[AFR][1000 genomes]
rs73836991	0.93[AFR][1000 genomes]
rs73836999	0.96[AFR][1000 genomes]
rs73838112	0.96[AFR][1000 genomes]
rs73838127	0.86[AFR][1000 genomes]
rs73838128	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
2	chr4:107014000-107034600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:107026800-107035800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:107029000-107037800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:107029800-107035200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr4:107029800-107038000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:107030000-107035400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr4:107030000-107035800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr4:107030200-107036200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr4:107030600-107035200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
11	chr4:107030600-107035800	ZNF genes & repeats	Liver	Liver
12	chr4:107030800-107037800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:107031000-107034800	ZNF genes & repeats	Ovary	ovary
14	chr4:107031000-107036200	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr4:107031200-107034800	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr4:107031200-107035200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:107031200-107035800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
18	chr4:107031600-107052600	Weak transcription	Fetal Thymus	thymus
19	chr4:107031800-107039400	Weak transcription	Brain Angular Gyrus	brain
20	chr4:107031800-107053400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:107032000-107034600	Weak transcription	Esophagus	oesophagus
22	chr4:107032000-107052200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:107032200-107038400	Weak transcription	Fetal Brain Male	brain
25	chr4:107032400-107037000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:107032600-107034800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:107032600-107034800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:107032600-107039600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:107033200-107035200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:107033400-107035000	Strong transcription	Psoas Muscle	Psoas
31	chr4:107033400-107035800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:107033400-107035800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr4:107033400-107039800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:107033400-107053000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:107033600-107034800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:107033600-107034800	ZNF genes & repeats	Aorta	Aorta
37	chr4:107033600-107035600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:107033600-107035800	Strong transcription	Fetal Stomach	stomach
39	chr4:107033600-107035800	Strong transcription	Pancreas	Pancrea
40	chr4:107033600-107037600	Strong transcription	Brain Hippocampus Middle	brain
41	chr4:107033600-107037800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr4:107033600-107038000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:107033600-107052800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr4:107033600-107053400	Weak transcription	Osteobl	bone
45	chr4:107033800-107034600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr4:107033800-107035000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr4:107033800-107035000	Weak transcription	Colonic Mucosa	Colon
48	chr4:107033800-107035000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr4:107033800-107035200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr4:107033800-107035600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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