Variant report

Variant	rs73836950
Chromosome Location	chr4:106954506-106954507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106952681..106954677-chr4:106971571..106974056,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11933357	0.86[AFR][1000 genomes]
rs11939464	0.93[AFR][1000 genomes]
rs11941861	0.93[AFR][1000 genomes]
rs11944792	0.86[AFR][1000 genomes]
rs17036578	0.93[AFR][1000 genomes]
rs56267034	0.86[AFR][1000 genomes]
rs58780037	0.93[AFR][1000 genomes]
rs60532274	0.86[AFR][1000 genomes]
rs60913696	0.86[AFR][1000 genomes]
rs61461344	0.86[AFR][1000 genomes]
rs73836980	0.93[AFR][1000 genomes]
rs73836982	0.86[AFR][1000 genomes]
rs73836984	0.86[AFR][1000 genomes]
rs73836987	0.93[AFR][1000 genomes]
rs73836990	0.86[AFR][1000 genomes]
rs73836991	0.86[AFR][1000 genomes]
rs73836999	0.89[AFR][1000 genomes]
rs73838112	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106953600-106956200	Enhancers	NHDF-Ad	bronchial
2	chr4:106953600-106956800	Enhancers	HSMMtube	muscle
3	chr4:106953800-106954600	Enhancers	Fetal Muscle Leg	muscle
4	chr4:106953800-106954800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:106953800-106954800	Enhancers	Osteobl	bone
6	chr4:106953800-106956000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:106953800-106957000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:106953800-106959600	Enhancers	HepG2	liver
9	chr4:106954000-106954800	Enhancers	Esophagus	oesophagus
10	chr4:106954000-106956000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:106954000-106956200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:106954000-106956200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:106954200-106955000	Enhancers	NH-A	brain
14	chr4:106954200-106956400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:106954400-106954600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:106954400-106954600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:106954400-106954800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:106954400-106954800	Enhancers	Aorta	Aorta
19	chr4:106954400-106954800	Flanking Active TSS	HSMM	muscle
20	chr4:106954400-106955000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr4:106954400-106955000	Enhancers	NHLF	lung
22	chr4:106954400-106955200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:106954400-106955400	Enhancers	Fetal Heart	heart
24	chr4:106954400-106955800	Enhancers	NHEK	skin
25	chr4:106954400-106956200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:106954400-106959200	Weak transcription	Pancreas	Pancrea

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