Variant report

Variant	rs73836999
Chromosome Location	chr4:107064474-107064475
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106817910..106819582-chr4:107062720..107065633,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168743	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11930404	0.81[AFR][1000 genomes]
rs11933357	0.89[AFR][1000 genomes]
rs11939464	0.96[AFR][1000 genomes]
rs11941861	0.96[AFR][1000 genomes]
rs11943335	0.80[AFR][1000 genomes]
rs11944792	0.89[AFR][1000 genomes]
rs17036578	0.96[AFR][1000 genomes]
rs56198900	0.82[AFR][1000 genomes]
rs56267034	0.90[AFR][1000 genomes]
rs58780037	0.96[AFR][1000 genomes]
rs60223553	0.83[AFR][1000 genomes]
rs60532274	0.90[AFR][1000 genomes]
rs60913696	0.90[AFR][1000 genomes]
rs61461344	0.90[AFR][1000 genomes]
rs61610478	0.82[AFR][1000 genomes]
rs73836950	0.89[AFR][1000 genomes]
rs73836968	0.83[AFR][1000 genomes]
rs73836980	0.96[AFR][1000 genomes]
rs73836982	0.90[AFR][1000 genomes]
rs73836984	0.90[AFR][1000 genomes]
rs73836987	0.96[AFR][1000 genomes]
rs73836990	0.90[AFR][1000 genomes]
rs73836991	0.90[AFR][1000 genomes]
rs73838112	1.00[AFR][1000 genomes]
rs73838127	0.83[AFR][1000 genomes]
rs73838128	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv4450	chr4:107037823-107082669	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv437411	chr4:107052107-107074097	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1799357	chr4:107058025-107099737	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1801434	chr4:107058025-107099737	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv1818028	chr4:107058139-107065220	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv1835336	chr4:107058139-107065220	Enhancers Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv1840264	chr4:107058139-107065220	Enhancers Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1841395	chr4:107058139-107065220	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv3338582	chr4:107060803-107065301	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:107037600-107066400	Weak transcription	Fetal Kidney	kidney
3	chr4:107037800-107077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:107053600-107067600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:107053800-107070000	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:107053800-107080000	Weak transcription	Right Ventricle	heart
8	chr4:107053800-107083400	Weak transcription	HSMM	muscle
9	chr4:107053800-107083800	Weak transcription	Left Ventricle	heart
10	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr4:107054000-107066400	Weak transcription	Liver	Liver
12	chr4:107054000-107067000	Weak transcription	Fetal Lung	lung
13	chr4:107054000-107067000	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:107054000-107067800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:107054000-107070000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:107054000-107070400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:107054000-107074400	Weak transcription	HepG2	liver
18	chr4:107054000-107076800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:107054000-107077000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:107054000-107077000	Weak transcription	Fetal Intestine Large	intestine
21	chr4:107054000-107077400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:107054000-107077400	Weak transcription	Aorta	Aorta
23	chr4:107054000-107077400	Weak transcription	Fetal Stomach	stomach
24	chr4:107054000-107077400	Weak transcription	Lung	lung
25	chr4:107054000-107081600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr4:107054000-107083200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:107054000-107083400	Weak transcription	Pancreas	Pancrea
28	chr4:107054000-107091000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
30	chr4:107054200-107065800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:107054200-107070000	Weak transcription	Adipose Nuclei	Adipose
32	chr4:107054200-107083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:107054600-107064600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr4:107054600-107074400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:107056000-107066600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:107056000-107067200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:107056000-107067200	Weak transcription	Primary T cells from cord blood	blood
38	chr4:107056200-107067200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:107056200-107077000	Weak transcription	Ovary	ovary
40	chr4:107056200-107083400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:107056800-107065000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr4:107057800-107069800	Weak transcription	Primary B cells from cord blood	blood
43	chr4:107062200-107071200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr4:107063000-107070000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:107063600-107067600	Weak transcription	Fetal Brain Male	brain
46	chr4:107064200-107064600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr4:107064200-107070400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:107064400-107069600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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