The 2.0 version of rSNPBase

Variant report

Variant rs11947959
Chromosome Location chr4:88388434-88388435
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:88344400-88398600 Weak transcription Gastric stomach
2 chr4:88345200-88400000 Weak transcription Rectal Smooth Muscle rectum
3 chr4:88345200-88416400 Weak transcription Colonic Mucosa Colon
4 chr4:88346600-88410400 Weak transcription Esophagus oesophagus
5 chr4:88351600-88414600 Weak transcription Psoas Muscle Psoas
6 chr4:88365000-88403400 Weak transcription Right Ventricle heart
7 chr4:88372600-88398800 Weak transcription Lung lung
8 chr4:88372800-88398800 Weak transcription Brain Anterior Caudate brain
9 chr4:88373800-88397000 Weak transcription Aorta Aorta
10 chr4:88373800-88397200 Weak transcription Brain Cingulate Gyrus brain
11 chr4:88373800-88397600 Weak transcription Brain Hippocampus Middle brain
12 chr4:88373800-88409800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr4:88374000-88441000 Weak transcription Spleen Spleen
14 chr4:88375800-88409400 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr4:88376200-88398200 Weak transcription Cortex derived primary cultured neurospheres brain
16 chr4:88378000-88410400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr4:88379200-88394600 Weak transcription Fetal Muscle Trunk muscle
18 chr4:88379400-88393800 Weak transcription Left Ventricle heart
19 chr4:88379600-88398200 Weak transcription Fetal Stomach stomach
20 chr4:88379600-88409400 Weak transcription Fetal Intestine Small intestine
21 chr4:88379800-88396000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr4:88380400-88388800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr4:88380400-88388800 Weak transcription Primary T regulatory cells fromperipheralblood blood
24 chr4:88380400-88394200 Weak transcription Fetal Lung lung
25 chr4:88380400-88394400 Weak transcription Stomach Smooth Muscle stomach
26 chr4:88380400-88397000 Weak transcription Brain Inferior Temporal Lobe brain
27 chr4:88380400-88397600 Weak transcription Colon Smooth Muscle Colon
28 chr4:88380400-88398800 Weak transcription Brain Substantia Nigra brain
29 chr4:88380400-88402400 Weak transcription Liver Liver
30 chr4:88380400-88410000 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr4:88380400-88419600 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr4:88380600-88390800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr4:88380600-88394200 Weak transcription Adipose Nuclei Adipose
34 chr4:88380600-88396200 Weak transcription Fetal Muscle Leg muscle
35 chr4:88380600-88398600 Weak transcription Ovary ovary
36 chr4:88380600-88400000 Weak transcription Fetal Intestine Large intestine
37 chr4:88380600-88400600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr4:88380600-88419400 Weak transcription Duodenum Mucosa Duodenum
39 chr4:88381000-88398200 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr4:88381600-88394000 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr4:88381800-88395000 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr4:88381800-88400200 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr4:88382800-88390400 Weak transcription Osteobl bone
44 chr4:88387000-88403600 Weak transcription Fetal Kidney kidney
45 chr4:88387400-88398000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015