Variant report

Variant	rs73839711
Chromosome Location	chr4:88313637-88313638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11930079	1.00[AMR][1000 genomes]
rs11947959	1.00[AMR][1000 genomes]
rs55799601	1.00[AMR][1000 genomes]
rs55805875	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60837247	1.00[AMR][1000 genomes]
rs61101244	1.00[AMR][1000 genomes]
rs73839184	1.00[AMR][1000 genomes]
rs73839710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88313000-88320400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:88313000-88320400	Weak transcription	Pancreas	Pancrea
3	chr4:88313200-88313800	Enhancers	Liver	Liver
4	chr4:88313200-88315600	Weak transcription	Right Atrium	heart
5	chr4:88313200-88320800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:88313400-88313800	Bivalent Enhancer	Dnd41	blood
7	chr4:88313400-88314000	Enhancers	HepG2	liver
8	chr4:88313600-88313800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr4:88313600-88313800	Enhancers	K562	blood
10	chr4:88313600-88316000	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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