Variant report

Variant	rs11950425
Chromosome Location	chr5:167679125-167679126
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10053496	1.00[AMR][1000 genomes]
rs10058240	1.00[AMR][1000 genomes]
rs11959062	0.92[ASN][1000 genomes]
rs17070041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3886252	1.00[AMR][1000 genomes]
rs58247534	1.00[AMR][1000 genomes]
rs58728182	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59122124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60173126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60646276	1.00[ASN][1000 genomes]
rs61687180	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv5117	chr5:167666701-167711857	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv462512	chr5:167672105-167702041	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv600257	chr5:167672105-167702041	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167646800-167695800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:167661600-167688200	Weak transcription	HMEC	breast
3	chr5:167666400-167682600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:167667200-167679200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167668600-167679600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:167672200-167695800	Weak transcription	Fetal Heart	heart
7	chr5:167673000-167695600	Weak transcription	Brain Anterior Caudate	brain
8	chr5:167673400-167679200	Strong transcription	NHEK	skin
9	chr5:167674400-167695800	Weak transcription	Fetal Lung	lung
10	chr5:167674600-167694400	Weak transcription	Fetal Brain Male	brain
11	chr5:167674800-167696000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:167675000-167686200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:167675000-167695800	Weak transcription	Brain Angular Gyrus	brain
14	chr5:167675400-167681000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:167675400-167696000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:167675400-167696000	Weak transcription	Fetal Brain Female	brain
17	chr5:167675600-167687200	Weak transcription	Right Ventricle	heart
18	chr5:167675600-167687400	Weak transcription	Left Ventricle	heart
19	chr5:167675800-167696000	Weak transcription	HSMM	muscle
20	chr5:167676600-167687200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:167677800-167679200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr5:167678600-167686200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:167678600-167687200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:167678800-167696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:167678800-167696000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:167679000-167681000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:167679000-167696000	Weak transcription	Brain Germinal Matrix	brain

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