Variant report

Variant	rs58247534
Chromosome Location	chr5:167709245-167709246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:167704230..167706545-chr5:167707615..167711292,3	MCF-7	breast:
2	chr5:167698241..167700910-chr5:167708360..167710392,2	MCF-7	breast:
3	chr5:167707162..167711471-chr5:167712924..167716772,5	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10053496	1.00[AMR][1000 genomes]
rs10058240	1.00[AMR][1000 genomes]
rs11950425	1.00[AMR][1000 genomes]
rs17070041	1.00[AMR][1000 genomes]
rs3886252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58728182	1.00[AMR][1000 genomes]
rs60173126	1.00[AMR][1000 genomes]
rs61187987	0.84[AFR][1000 genomes]
rs61687180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv5117	chr5:167666701-167711857	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167704400-167713000	Weak transcription	Fetal Brain Male	brain
2	chr5:167704600-167718000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:167704800-167711000	Weak transcription	Pancreas	Pancrea
4	chr5:167704800-167712400	Weak transcription	Gastric	stomach
5	chr5:167708800-167709400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:167708800-167709600	Enhancers	Placenta	Placenta
7	chr5:167709000-167709400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:167709000-167709400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:167709000-167709400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:167709000-167709400	Enhancers	Fetal Lung	lung
11	chr5:167709000-167709400	Enhancers	HepG2	liver
12	chr5:167709000-167709600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:167709000-167709600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:167709000-167709600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:167709000-167709600	Enhancers	GM12878-XiMat	blood
16	chr5:167709200-167709400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:167709200-167709400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:167709200-167709600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr5:167709200-167709600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:167709200-167709600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:167709200-167709600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr5:167709200-167709600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:167709200-167709600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:167709200-167709600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr5:167709200-167709600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:167709200-167709600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:167709200-167709600	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr5:167709200-167709600	Enhancers	NH-A	brain
29	chr5:167709200-167709600	Enhancers	Osteobl	bone

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