Variant report

Variant	rs11951676
Chromosome Location	chr5:36278292-36278293
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16902925	1.00[YRI][hapmap]
rs16902929	1.00[YRI][hapmap]
rs16902935	1.00[YRI][hapmap]
rs16902937	1.00[YRI][hapmap]
rs16902939	1.00[YRI][hapmap]
rs16902940	1.00[YRI][hapmap]
rs16902942	1.00[YRI][hapmap]
rs16902943	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36262800-36283800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:36269600-36279600	Weak transcription	Brain Angular Gyrus	brain
3	chr5:36272600-36281800	Weak transcription	Brain Substantia Nigra	brain
4	chr5:36273600-36279800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:36274800-36282800	Weak transcription	Brain Anterior Caudate	brain
6	chr5:36275200-36281600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:36276800-36278800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:36276800-36279000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:36276800-36280400	Enhancers	Adipose Nuclei	Adipose
10	chr5:36277200-36278400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:36277200-36279400	Weak transcription	Ovary	ovary
12	chr5:36277200-36282600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:36277400-36278400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:36277400-36278400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:36277400-36278400	Weak transcription	NHDF-Ad	bronchial
16	chr5:36277400-36278600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:36277800-36278600	Enhancers	Brain Hippocampus Middle	brain
18	chr5:36278000-36279000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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