Variant report

Variant	rs16902942
Chromosome Location	chr5:36300354-36300355
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36297689..36300593-chr5:36309430..36312413,2	K562	blood:
2	chr5:36241131..36242804-chr5:36299171..36301601,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11951676	1.00[YRI][hapmap]
rs16902915	1.00[AMR][1000 genomes]
rs16902925	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16902929	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16902935	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16902937	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16902939	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16902940	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16902943	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36298400-36300400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:36299000-36300400	Weak transcription	Hela-S3	cervix
3	chr5:36299000-36300600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:36299000-36300600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:36299200-36300400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:36299200-36300400	Weak transcription	HSMM	muscle
7	chr5:36299200-36300400	Weak transcription	HSMMtube	muscle
8	chr5:36299200-36302400	Weak transcription	Placenta	Placenta
9	chr5:36299200-36302600	Active TSS	Brain Anterior Caudate	brain
10	chr5:36299800-36301400	Enhancers	Colon Smooth Muscle	Colon
11	chr5:36300000-36300800	Enhancers	Osteobl	bone
12	chr5:36300000-36302000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:36300000-36302000	Flanking Active TSS	Liver	Liver
14	chr5:36300000-36302200	Active TSS	Brain Hippocampus Middle	brain
15	chr5:36300000-36302600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:36300000-36302600	Active TSS	Brain Substantia Nigra	brain
17	chr5:36300000-36303000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:36300000-36303000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:36300000-36303000	Active TSS	Aorta	Aorta
20	chr5:36300200-36300400	Enhancers	Adipose Nuclei	Adipose
21	chr5:36300200-36300400	Active TSS	Ovary	ovary
22	chr5:36300200-36300400	Enhancers	Stomach Smooth Muscle	stomach
23	chr5:36300200-36300600	Enhancers	Fetal Kidney	kidney
24	chr5:36300200-36300800	Flanking Active TSS	NHDF-Ad	bronchial
25	chr5:36300200-36301400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:36300200-36301400	Enhancers	Fetal Lung	lung
27	chr5:36300200-36301400	Enhancers	Rectal Smooth Muscle	rectum
28	chr5:36300200-36302000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr5:36300200-36302400	Active TSS	Brain Cingulate Gyrus	brain
30	chr5:36300200-36302600	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr5:36300200-36302600	Active TSS	Right Atrium	heart
32	chr5:36300200-36302800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:36300200-36302800	Active TSS	Brain Angular Gyrus	brain

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