Variant report

Variant	rs11951867
Chromosome Location	chr5:37820201-37820202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37819271..37821303-chr5:37822916..37825812,2	K562	blood:
2	chr5:37814703..37816727-chr5:37818760..37821131,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11740708	1.00[CEU][hapmap]
rs11745806	0.80[EUR][1000 genomes]
rs11749411	0.93[EUR][1000 genomes]
rs16903732	1.00[CEU][hapmap]
rs17386472	1.00[CEU][hapmap]
rs3812047	0.83[CEU][hapmap]
rs62360371	0.80[EUR][1000 genomes]
rs62360372	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62360376	0.80[EUR][1000 genomes]
rs62360378	0.80[EUR][1000 genomes]
rs7731209	0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs949859	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37812200-37822200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:37813400-37824400	Weak transcription	Fetal Kidney	kidney
3	chr5:37815000-37822200	Weak transcription	Fetal Intestine Small	intestine
4	chr5:37815800-37830600	Weak transcription	Ovary	ovary
5	chr5:37816200-37834000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:37816400-37822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:37816800-37823000	Weak transcription	NHEK	skin
8	chr5:37816800-37830600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:37816800-37831600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:37817000-37821800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:37817000-37831800	Weak transcription	NH-A	brain
12	chr5:37817200-37825400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:37817400-37823200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:37817400-37823400	Weak transcription	HSMM	muscle
15	chr5:37817400-37824000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:37817400-37824000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:37817400-37826800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:37817400-37831800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:37817800-37824200	Strong transcription	Osteobl	bone
20	chr5:37818200-37821000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:37818200-37834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:37818400-37822200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:37818400-37823800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr5:37818400-37826200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:37819200-37825600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:37819400-37821200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:37819400-37821400	Weak transcription	HSMMtube	muscle
28	chr5:37819600-37823800	Weak transcription	Colon Smooth Muscle	Colon
29	chr5:37819800-37821800	Weak transcription	Fetal Stomach	stomach
30	chr5:37820200-37832000	Strong transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links