Variant report

Variant	rs11740708
Chromosome Location	chr5:37868088-37868089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11745806	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11747340	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11951867	1.00[CEU][hapmap]
rs16903732	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17379667	0.82[EUR][1000 genomes]
rs17386472	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55750779	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56000387	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56049351	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62360366	0.82[EUR][1000 genomes]
rs62360369	0.80[EUR][1000 genomes]
rs62360370	0.82[EUR][1000 genomes]
rs62360371	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62360373	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62360376	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62360378	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62360397	0.85[EUR][1000 genomes]
rs949859	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv881401	chr5:37849688-37901408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37867000-37869600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:37867000-37869600	Weak transcription	HMEC	breast
3	chr5:37867000-37875200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:37867200-37868600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:37867400-37868200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:37867400-37868200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:37867400-37868200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:37867800-37868200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:37867800-37868200	Enhancers	Fetal Muscle Leg	muscle
10	chr5:37868000-37868200	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:37868000-37868200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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