Variant report

Variant	rs62360397
Chromosome Location	chr5:37888667-37888668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11740708	0.85[EUR][1000 genomes]
rs11745806	0.82[EUR][1000 genomes]
rs55750779	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56049351	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62360376	0.82[EUR][1000 genomes]
rs62360378	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv881401	chr5:37849688-37901408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028115	chr5:37882426-37936352	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37883400-37889600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:37886400-37889200	Enhancers	NHEK	skin
3	chr5:37886400-37890800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:37887000-37889800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:37887000-37892400	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:37887200-37889200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:37887200-37892600	Weak transcription	Ovary	ovary
8	chr5:37887800-37890800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:37888000-37891000	Enhancers	HMEC	breast
10	chr5:37888200-37890600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:37888200-37890800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:37888200-37891000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:37888400-37889800	Enhancers	HSMMtube	muscle
14	chr5:37888400-37890600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:37888400-37890600	Enhancers	Hela-S3	cervix
16	chr5:37888400-37890600	Enhancers	NH-A	brain
17	chr5:37888400-37890600	Enhancers	NHDF-Ad	bronchial
18	chr5:37888400-37890600	Enhancers	Osteobl	bone
19	chr5:37888600-37888800	Enhancers	Fetal Stomach	stomach
20	chr5:37888600-37889000	Enhancers	Esophagus	oesophagus
21	chr5:37888600-37889000	Enhancers	NHLF	lung
22	chr5:37888600-37889400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr5:37888600-37890000	Enhancers	HSMM	muscle
24	chr5:37888600-37890800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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