Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37807892..37810201-chr5:37812921..37814976,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11738696	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11740708	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11745806	0.88[EUR][1000 genomes]
rs11747340	0.82[EUR][1000 genomes]
rs11951867	1.00[CEU][hapmap]
rs16903732	1.00[CEU][hapmap];0.88[GIH][hapmap];0.98[EUR][1000 genomes]
rs17386472	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3812047	0.83[CEU][hapmap];1.00[MEX][hapmap]
rs56000387	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62358931	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62358932	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62358933	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62360366	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62360369	0.98[EUR][1000 genomes]
rs62360370	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62360371	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62360373	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62360376	0.88[EUR][1000 genomes]
rs62360378	0.88[EUR][1000 genomes]
rs7721618	1.00[CHD][hapmap];0.90[GIH][hapmap]
rs7731209	1.00[CHD][hapmap];0.89[GIH][hapmap]
rs949859	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37806800-37810200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:37807000-37810400	Weak transcription	HSMM	muscle
3	chr5:37807000-37811800	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:37808200-37812800	Weak transcription	HSMMtube	muscle
5	chr5:37808600-37810400	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:37808800-37810200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:37808800-37810200	Enhancers	NHDF-Ad	bronchial
8	chr5:37808800-37810400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr5:37808800-37813000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:37809000-37810200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:37809200-37810200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:37810000-37811800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:37810000-37812200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:37810000-37812200	Enhancers	NH-A	brain

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