Variant report
| Variant | rs62360366 |
|---|---|
| Chromosome Location | chr5:37804607-37804608 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:37802721..37804855-chr5:37805974..37808582,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11738696 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11740708 | 0.82[EUR][1000 genomes] |
| rs11745806 | 0.88[EUR][1000 genomes] |
| rs11747340 | 0.82[EUR][1000 genomes] |
| rs16903732 | 0.98[EUR][1000 genomes] |
| rs17379667 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17386472 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs56000387 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs56053816 | 0.83[AMR][1000 genomes] |
| rs62358886 | 0.83[AMR][1000 genomes] |
| rs62358887 | 0.83[AMR][1000 genomes] |
| rs62358892 | 0.83[AMR][1000 genomes] |
| rs62358893 | 0.83[AMR][1000 genomes] |
| rs62358917 | 0.83[AMR][1000 genomes] |
| rs62358922 | 0.83[AMR][1000 genomes] |
| rs62358923 | 0.83[AMR][1000 genomes] |
| rs62358925 | 0.83[AMR][1000 genomes] |
| rs62358926 | 0.83[AMR][1000 genomes] |
| rs62358931 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62358932 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62358933 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62360369 | 0.98[EUR][1000 genomes] |
| rs62360370 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62360371 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62360373 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62360376 | 0.88[EUR][1000 genomes] |
| rs62360378 | 0.88[EUR][1000 genomes] |
| rs949859 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949716 | chr5:37179341-37967352 | Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 58 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023871 | chr5:37330018-37804744 | Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv537729 | chr5:37330018-37804744 | Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 4 | nsv597846 | chr5:37430215-37813591 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:37804000-37808800 | Weak transcription | NHDF-Ad | bronchial |
